Ostreococcus tauri: OT_ostta08g00170
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Entry
OT_ostta08g00170 CDS
T01358
Name
(RefSeq) Ribonucleoprotein LSM domain,eukaryotic/archaea-type
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta08g00170
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta08g00170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta08g00170
03041 Spliceosome [BR:
ota03041
]
OT_ostta08g00170
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OT_ostta08g00170
mRNA degradation factors
5'-3' decay
Lsm complex
OT_ostta08g00170
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
OT_ostta08g00170
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
9831544
NCBI-ProteinID:
XP_022840889
OrcAE:
OT_ostta08g00170
LinkDB
All DBs
Position
8:<33011..>33402
Genome browser
AA seq
99 aa
AA seq
DB search
MSANGGALGPMVHARVHVLTNDGRHVVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPL
GVYMIRGDNVALVGPVDEELDAKLDLSGTRALPLKPIKF
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgaacgggggggcgctggggcccatggtgcacgcgcgcgtgcacgtgctcacg
aacgacggtcgacacgtcgtgggaacgctccggggattcgaccaagtgacgaatgtcatc
ctggaggattgcgccgagcgcgtgtactcgagcgagtcgggggtggaggaagccccgctg
ggcgtgtacatgattcgaggcgataacgtagcgctcgtgggaccggtggacgaggagctg
gacgcaaagttagatttgtcgggaacgcgggcgctaccgctgaaaccgataaagttttag
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