Ostreococcus tauri: OT_ostta08g03230
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Entry
OT_ostta08g03230 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta08g03230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta08g03230
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta08g03230
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OT_ostta08g03230
Spliceosome [BR:
ota03041
]
Complex A
U1 snRNP components
U1 related factors
OT_ostta08g03230
Complex B
OT_ostta08g03230
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
Pre-60S particles
Helicases
OT_ostta08g03230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Mpt_N
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
9831463
NCBI-ProteinID:
XP_003080884
OrcAE:
OT_ostta08g03230
UniProt:
Q012X8
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Position
8:complement(547270..548985)
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AA seq
571 aa
AA seq
DB search
MGYVPPHLRGGGDANANASAGDGRDHGRGSGHRDDRGPPPGRRLDDRDAARGDGRGGGAA
RGGAHAPVFAAWRPSARAEALTTAQATEIRERLGVTVDVEDGEPEAPSAIESFEDMELKR
DILADIKFREYDKPSPIQAQAIPVILSGRDVLGCAETGSGKTAAFSIPMIQHALNQAPLR
QGDGPFAIVMAPTRELAQQIETEAKTFTRSSKGFRTAIIVGGTNMSEQRSMLRGGVQIVV
ATPGRLIDHLQQGNTNLARVSFVVLDEADRMLDMGFEPQIREVLMNLPKPHQTLLFSATM
PVEVEALAADYLNKPVKVKVGQTSAPTANVSQQLEKVVDAEKVDRLVTMLISEQREAQKL
GHSMPMTVVFVERKHRADEIAELLNAENVSAAALHGGRSQGEREAALHDYKTGRCSVLVA
TDVAARGLDVKGVAHVVNLDLPRNFEDYVHRIGRTGRAGMSGRSTSFYTDRDSFIVAQIK
RALMELEAGNAFAFATGREARAKEREEARAWREGKQHEAAVVETEGGVTITVEDKFKHMM
VSAPVAAPGAAAPAAGVADDAWGDGSDDDAW
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgggatacgtgcccccgcacctgcgaggcggcggcgacgcgaacgcgaacgcgagcgcg
ggcgacgggcgagaccacggacgcgggagtgggcatcgggacgaccgagggccgccgccg
ggtcgacggctcgacgaccgcgacgccgcgcgcggcgatggacgcggcggtggggcggca
cgcggtggggcgcacgcgccggtgttcgcggcgtggcgaccgagcgcccgggcggaggcg
ctcacgacggcgcaggcgacggagattcgcgaacgcttgggggtgaccgtggacgtcgag
gacggcgagccggaggcgccgagcgcgatcgaatctttcgaggacatggagttgaagagg
gatattctggcggacattaagttcagagagtacgataagccgtcgccgattcaggcgcag
gcgattccggtgatcctgagcggtcgggacgtcttggggtgcgcggagacggggagcggt
aagacggcggcgttttcgattccgatgattcaacacgcgctgaatcaagcgccgctgagg
caaggggacgggccgttcgcgatcgtgatggcgccgacgcgggagttggcgcagcaaatc
gagacggaggcgaagacgttcacgcgaagctccaaggggtttagaacggccattatcgtc
ggtgggacgaacatgagcgagcaacgaagcatgttgcgaggcggagtgcagatcgtcgtc
gccaccccgggtcgcttgatcgatcacttgcagcaagggaatacaaacctagcccgagtg
tcctttgtcgtcctcgacgaagccgatcgcatgctcgacatgggtttcgagccgcagatc
cgcgaggtactgatgaacttgcccaagccgcatcaaacgcttctattctcggcgacgatg
ccagtcgaagtcgaggctttggccgctgactacctgaataagcctgtcaaggtgaaggtg
ggccaaacgagcgctcccacggcaaacgtgtcccagcaactcgaaaaggttgtggacgcc
gaaaaggtggatagactcgtcaccatgctgataagtgagcagcgcgaggcgcagaagctc
ggccacagcatgcccatgactgtggtgttcgttgagcgtaagcaccgcgctgacgagatc
gccgagctcctgaacgcggagaatgtgtccgccgctgcgcttcacggcggtcgctcgcag
ggtgagcgtgaggcggcacttcacgattacaaaacgggtcgatgctccgtgctcgtcgcc
accgatgttgccgctcgcggtttggatgtgaagggcgtcgcccacgtcgtcaacctcgat
ttaccgcgtaactttgaagactacgtccaccgcatcggtcgtaccggtcgcgccggtatg
tctgggcgatcgacatccttctacaccgaccgtgactcgttcatcgtggctcaaatcaag
cgcgcgctgatggagctcgaggctggcaacgctttcgcctttgccaccggtcgcgaggct
cgcgccaaggaacgcgaggaggccagggcctggcgcgagggcaagcagcacgaggctgcc
gtcgtcgagaccgagggcggggtcaccatcaccgtcgaggacaagttcaagcacatgatg
gtaagcgcgcccgtcgccgcaccgggcgccgccgcgcccgccgccggcgtcgccgacgac
gcctggggcgatggatccgacgacgacgcctggtaa
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