Ostreococcus tauri: OT_ostta08g03440
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Entry
OT_ostta08g03440 CDS
T01358
Name
(RefSeq) Exoribonuclease, phosphorolytic domain 2
KO
K03678
exosome complex component RRP45
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta08g03440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta08g03440
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
OT_ostta08g03440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
YL1
PFF1_TM
Motif
Other DBs
NCBI-GeneID:
34946077
NCBI-ProteinID:
XP_022841040
OrcAE:
OT_ostta08g03440
UniProt:
A0A090M8X4
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Position
8:582616..583995
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AA seq
459 aa
AA seq
DB search
MRPFSTDTDTLVSMNNREFIVAALQGDEDSGPFRIDGRAPGEVRGGGDTFENQIEISFGP
LDGVCVVRLGHTLACATTTGQLERPASAGASAEGSLRVDVEFSSGACTGFARDGRASRET
RQRSRDLGMLLERGLKDGRAVDVESLCVLAGKRTWAITCSVTILAHDGNLAGVASLAACG
SLMTYRRPECSVDPNSGIVTVHSVDAREAIALNMHHFPIASTYCFFDEAPGLAVADPTLE
EEITADGSVVCVVNSLEEVCAVSTSGNGVSGEDVKQCVSASVNTAMKWTEVLKAAAADFE
AARLANKVRTHYDGYKDAPDDDHLLDLFYKPGRDDIEFVDDDAEETPQSDSAEDEDSDDD
ERGEDIDNEAAIDDDAVVTERVSTKKTKKKTSEPPKDESDEETRFREDDDIDALFDKAEK
KKKKKLASWDDLPGDGESLADAVKPRKKLKKTSTKSGKK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgcgtccgttctctaccgacaccgacaccttggtctccatgaacaatcgcgagttcatc
gtcgccgcgttgcaaggcgacgaagacagcggtccgttccgcatcgacggccgcgcgccc
ggggaagttcgcggcggcggcgacacttttgagaatcaaatcgaaatctcattcggaccc
ctcgacggtgtttgcgtcgttcgtttgggccatacgctcgcgtgcgcgacgacgacgggt
caattggagcgtccggcgtccgcgggggcgtcggcggaggggtcgttacgagtggacgtg
gagttttcgagcggcgcgtgcacggggttcgcccgggacggcagagcgagtcgggagacg
cggcagcgatcgagagatttagggatgttgttagagagagggttgaaggatgggcgagcg
gtggacgtggagtcgctgtgcgtgttggcggggaagcggacgtgggcgatcacttgttcg
gttacaattttggcgcacgacggaaatttggcgggcgtcgcgagtttagccgcgtgcggg
tccctgatgacgtatcgcaggccggagtgctcggtggatccgaacagtggtatcgtgacg
gtacatagtgtggacgcgagggaggcgatcgcgctgaacatgcaccactttccgattgcg
tccacgtattgcttcttcgatgaagcgccgggactggctgtggcggatcccacgctcgag
gaagagatcaccgccgacgggagcgtggtgtgcgtcgtgaactcgctcgaggaagtgtgc
gcggtgtcgacgagcggaaacggggtgtcgggcgaagatgtgaagcagtgcgtatcggcg
agcgtcaacacagcgatgaagtggacagaggtgctcaaggcagcggcggcggattttgaa
gctgccagactcgcgaacaaggttcgaacgcattacgacgggtataaagacgctcctgac
gacgatcacctcctcgatttgttctacaaacctggccgagacgacatcgagtttgtggat
gacgacgcggaggagactccgcagagcgacagtgccgaggacgaggatagcgacgatgac
gaaagaggagaagatatcgataatgaagctgcgattgatgacgacgccgttgtcactgag
cgcgtgtctacgaagaagacgaagaaaaaaacgtctgaacctccaaaggatgagagcgac
gaggagaccagattccgcgaggacgatgacatcgatgccctcttcgacaaggcggaaaag
aagaagaagaagaaacttgcatcctgggacgacctcccgggcgacggtgaatccctcgcc
gacgcggtgaaacctcggaaaaagctcaagaagacgtcgaccaaatccggcaaaaagtaa
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