Ostreococcus tauri: OT_ostta09g02930
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Entry
OT_ostta09g02930 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta09g02930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta09g02930
03041 Spliceosome [BR:
ota03041
]
OT_ostta09g02930
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta09g02930
03016 Transfer RNA biogenesis [BR:
ota03016
]
OT_ostta09g02930
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OT_ostta09g02930
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
OT_ostta09g02930
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OT_ostta09g02930
Complex C
U4/U6.U5 tri-SnRNP related factors
OT_ostta09g02930
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
Pre-60S particles
Helicases
OT_ostta09g02930
Transfer RNA biogenesis [BR:
ota03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
OT_ostta09g02930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
9831707
NCBI-ProteinID:
XP_003081282
OrcAE:
OT_ostta09g02930
UniProt:
A0A090N422
LinkDB
All DBs
Position
9:complement(447003..450227)
Genome browser
AA seq
1074 aa
AA seq
DB search
MSSKGTSKGTSKWTKCRRKGRRKGRDVVERDSRANGGRTRRMPASTTSTVGGARAGAGED
HARGRKRRATAAAATTATVDAVPMDGTAADAAGRRVISDAHAARGRSTCVHEVATPPGWM
GDRARLMDPRHEGRGAKEYPFELDAFQRVAVGALERNESVLVAAHTSAGKTVVAEYAIAM
AFRDKQRVIYTSPLKALSNQKFRELSEEFGDVGLMTGEASINPNSTCIVMTTEVLRSMLY
RGGDVIREVKWIVFDEVHYMRDRERGVVWEESIIFAPKDARLVFLSATLPNALEFAQWVT
SLHRHPCHVVYTDHRPTPLQHYAFPKGGSGLHLVVNEQSQFKSENFTKLMQAIAQSAEKS
SGGGDRGGRGRGGGRGGGGRGGGRGGGRGGGGGSGGDADILRIVRMVKEKSFFPVIVFSF
SRRECEEYAKHVAKLNFNTPEEAEQVREVYNAALLNLSQEDRQLTAVKAILPLLEAGIGI
HHSGLLPVLKELIEILFGESLIKCLFATETFAMGLNMPARTVIFTAVKKFDGSDMRVLAP
GEYTQMSGRAGRRGKDDRGICIVMCDERMEEQAMKEMILGEPQPLNSEFKLSYYSILNLL
KRATGTVDAEYVISRSFHQFQHAKQLPEMKAKLADVQNRASKIKAVDSKEIQEYVKLRRD
YREAEKSVMMTMLEPSNCLRFFTSGRLIRIRDGDTNWGWGAVVHVLTVEGANGENTYVLD
CLLRCGPGAAEGNLVPADAQNPKYNSTEIIPVGLHLVDAISAMRLTLPDDLRSKEARESV
WLAVETVTKKLTEKGKDIPLIDPIEDMKINDVAFVRKYRSLGSLRAEFQSHSLYSEADAR
ENSELTAKINIFEEKANLLAQASDLKQKITSSELTKFRDDLSARSRVLKKLGHIDADGVV
LTKGRAACEIDTADELLVTELMFNGVFAGLHPHALVALASCFMPVEKSNSTNMDKSSKAL
SKPLKALQEAAREIGNVQKECKIEIDVDEFVDSFKPTMVEIVYCWAQGEPFSEIVKKTDL
FEGTIIRAMRRLDELMMELHRSSVAVGDTDLAKKFEQGAAALRHGIVFADSLYT
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgaaagggacgtcgaaagggacgtcgaaatggacgaaatgtcgtcgaaaggga
cgtcgaaagggacgcgatgtcgtcgaaagggacagccgcgcgaacggcggccgcacacgc
cgaatgcccgcgtcgacgacgtccaccgtcggtggcgcgcgcgcgggcgccggggaggac
cacgcgcgggggcggaagcgtcgagcgacggcggcggcggcgacgacggcgacggtggac
gcggtgccgatggatgggacggcggcggacgcggcggggcgacgggtgatttcggacgcg
cacgcggcgcgcggacgctcgacgtgcgtgcacgaggtggcgacgccgccgggatggatg
ggtgatcgagcgaggttgatggacccgaggcacgagggacggggggcgaaggagtacccg
tttgagttggacgcgtttcagcgcgtggcggtcggcgcgctggagcggaacgagagcgtg
ttagtcgcggcgcacacgtcggcggggaagacggtggtggcggagtacgcgatcgcgatg
gcttttagggataagcagcgggtgatatatacgtcgccgctcaaggcgctgagtaatcaa
aagtttcgagagctgagcgaggagttcggagacgtcgggttgatgacgggcgaagcgtcg
atcaatccgaacagcacgtgcatagtgatgacgacggaggtgctgcggtcgatgttgtat
cgaggcggagacgtcattcgagaggtgaagtggatcgtgttcgatgaggtgcattacatg
cgggatcgcgaacgcggtgtggtgtgggaggagtcaatcatattcgcgccgaaggacgcg
aggttagtttttctcagcgccacgctcccgaacgcgctggagttcgctcagtgggtgact
agcttgcacagacatccgtgtcacgtggtgtacaccgatcatagaccgacgccgttgcag
cattacgcgtttcccaaaggcgggagcggattacatctcgtcgtcaacgaacagagccaa
ttcaagtcggagaatttcacaaagctcatgcaagcgatcgcacagagcgcggaaaagagt
tccggtggcggagatcgcgggggcagaggacgcggcggtggacgtggaggtggtggacgc
ggcggcgggcgcggcggtgggcgcggcggcggcggtggttcaggcggtgatgcggacatt
ttgcgcatcgttcggatggtcaaggagaagagctttttccccgtcatcgttttcagtttc
agtcgacgcgagtgcgaagagtacgccaaacacgtggcaaagttgaattttaatactcct
gaggaggcggaacaggttcgtgaggtgtacaacgcggcgttgctcaacttgtcacaggag
gatcgacagcttactgcggtgaaggcaattttgcccttgcttgaggcgggcatcggcatc
caccacagtggtttgctccccgtacttaaagagctgattgaaatcttgttcggagaatcg
ctcatcaagtgtttgttcgccacagaaacttttgcgatggggttgaatatgccggcaagg
actgtgatatttaccgcagtgaaaaagttcgacggatcagatatgcgcgtgttggcgccg
ggagagtacacgcaaatgtccgggagagctggacgacgaggcaaggatgatcgtgggatt
tgtatcgttatgtgtgacgagcgcatggaagaacaggcgatgaaggaaatgatcctcggc
gagccgcaaccgctgaactccgagttcaagttgagctattacagcattctcaacctcttg
aagcgcgccacgggtaccgtcgatgctgagtacgtgatatctcgatcattccaccaattt
caacacgcgaagcaactgcccgagatgaaggcaaaactcgctgacgtgcagaacagagcg
tcgaaaatcaaggcggtggacagcaaggaaatccaagaatacgtcaaactcagacgtgat
tatcgcgaggcggaaaaatcagtaatgatgacgatgctggagccatcaaactgtctgcga
ttcttcacttctggtcgactcatacgcattcgagacggcgacacgaattggggatgggga
gccgtggtgcacgtcctgactgtagagggtgcgaacggtgaaaacacgtacgttttggat
tgtctacttcgatgcggaccgggcgctgccgagggtaatctcgtgcccgcagacgcacag
aatccgaagtataactcgacggagataataccggtcggattgcatctcgtagacgccata
agtgcgatgcgtctgacccttcccgatgacttgcgctcaaaggaagctcgcgaaagcgtt
tggcttgcggtggagacggtgacaaagaaactcacggaaaagggaaaagatataccactc
atcgacccaatcgaggatatgaaaatcaatgatgttgcgtttgtgagaaagtatcgatca
ctcggatcactgcgagcggagttccagtcgcattccttgtacagcgaggcggacgcacga
gagaatagcgagctgaccgccaagattaacatcttcgaggaaaaggcaaatctactcgct
caagcgtcggatttgaagcagaagattacatcgagcgagctgacaaagtttcgggacgat
ttgagcgcgcgaagccgtgttttgaaaaagttgggacacatcgatgcagacggcgtcgtc
ctcaccaagggccgggcggcgtgtgaaatcgatactgccgacgagcttttggtcacggag
ctaatgttcaacggcgtgttcgccggacttcatccacacgcactcgtcgccctcgcttcg
tgcttcatgccagtggagaagagcaactcgacgaacatggataaatcgtcaaaggctctg
tcgaaacccctcaaggctcttcaggaagccgcgcgcgaaataggcaacgttcaaaaagag
tgcaagatcgagatagacgtggacgagttcgtcgattcgttcaaaccaaccatggtcgaa
atcgtgtactgctgggcgcagggagaacctttcagtgaaatagtcaagaagacggacttg
ttcgaggggactatcatccgagcgatgcgtcgactcgatgaactcatgatggagctccat
cgatcgagcgtcgccgtcggggacactgatttggctaagaagtttgaacaaggcgccgca
gcgctgcgacacggcatcgttttcgcggattcattgtatacgtag
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