Ostreococcus tauri: OT_ostta10g01920
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Entry
OT_ostta10g01920 CDS
T01358
Name
(RefSeq) tRNA-splicing ligase, RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ota
Ostreococcus tauri
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ota03016
]
OT_ostta10g01920
Enzymes [BR:
ota01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
OT_ostta10g01920
Transfer RNA biogenesis [BR:
ota03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
OT_ostta10g01920
Prokaryotic type
tRNA splicing ligases
OT_ostta10g01920
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
9832166
NCBI-ProteinID:
XP_003081626
OrcAE:
OT_ostta10g01920
UniProt:
Q00ZY2
A0A1Y5I524
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All DBs
Position
10:<314831..>316378
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AA seq
515 aa
AA seq
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MAPATEAAPARTYDDEAAYVTVDDAHRVRVARGFVPNMRVDGVVYVNAALRALVLEELAA
YCDATAHRGGGYSPALKQIANVAALPGVVGASIALPDVHSGYGFAIGNVAAFDVGDETSI
VSPGGVGFDINCGVRLLRTNLTEAEVGPVKEALAQSLFDHIPVGVGSRGIIPTTPAALEA
VLEMGMDWSLREGYAWAEDKEHTEEYGRMLNADPSKVSARAKKRGLPQMGTLGAGNHYAE
IQVVDEIYDEFAAKKMGIDRVGQVCIMIHSGSRGLGHQVATDSLTAMERAMERDGIEVND
RQLACARISSQEGQDYLAAMACAANYAWVNRSSMTFLCRQAFAKMFGKPPDELDMHVVYD
VSHNIAKFEEHMVDGEMKTLLVHRKGSTRAFPPHHPLIPVDYQYTGQPVLIGGTMGTCSY
ILTGTEKGMRDTFGSTCHGAGRARSRNKSRHVLQYEDVLEKLKTKGIAIRVASPKLVMEE
APESYKDVTEVVNTCHDAGISKKCVKLRPIAVVKG
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgcgaccgaggccgcgcccgcgcgcacgtacgacgacgaggccgcgtacgtc
accgtcgatgacgcccaccgcgtgcgcgtcgcgcgcggattcgtcccgaacatgcgcgtc
gatggcgtcgtgtacgtcaacgccgcgctccgggcgttagtgctcgaggaattggcggcg
tactgcgacgcgacggcgcaccgagggggtggatactccccggcgttgaagcagatcgcg
aacgtggcggcgctgccgggggtggtgggggcgtcgatcgcgttgccggacgtgcacagc
gggtacgggttcgcgattggaaacgtggcggcgttcgacgtcggggacgagacgtccatc
gtgtcgccgggtggggttggattcgatataaattgtggcgtgcggttgttgcggacgaat
ttgacggaggcggaggttggaccggtgaaggaagcgctggcgcagtcgttgtttgatcac
ataccggtgggcgtggggagtcgcgggatcattccgacgacgccggcggcgctggaggcg
gtgctggagatggggatggactggagtttgagagaagggtacgcgtgggcggaggataag
gagcacacggaggagtacggacggatgctgaacgcggatccgagcaaggtgagcgctcgg
gccaaaaagcgcggcttgccgcaaatgggaacgctcggcgccgggaatcactacgcggag
atacaggtcgtggacgagatttacgacgagttcgcggccaagaagatgggcatcgatcgc
gtcggtcaagtttgtatcatgattcatagcggaagtcgaggattggggcaccaggtggcg
acggattcgctcaccgcgatggaacgcgcgatggagcgcgacgggatcgaggtgaacgat
cgacagctcgcgtgcgcgcgcatcagcagccaggagggacaagactacctcgccgcgatg
gcgtgcgcggcgaactatgcctgggtcaaccgctcgagcatgacgttcttgtgccgtcaa
gcgtttgcgaaaatgtttggtaagcctccggacgagctcgacatgcacgtcgtgtacgac
gtgtcgcacaacatcgctaaatttgaggaacacatggtcgacggagagatgaaaacgctc
ctggtgcatcgtaaggggagcacgcgcgcgttcccgccgcatcacccgttgattcccgtg
gactatcagtacacgggccaaccggttttgatcggtggcacgatggggacgtgttcgtac
atcctcacgggcacggagaaaggcatgcgcgacacattcggctcaacgtgtcacggtgcc
ggtcgcgcgcgaagcagaaacaaatcccgacacgttcttcagtacgaagatgtcttggaa
aaactcaagacgaaggggatcgccattcgcgtcgcatcgcccaagctcgtcatggaggag
gcgcccgagtcgtacaaggacgtcaccgaggtcgtgaacacgtgccacgacgcggggatc
tcaaagaagtgcgtcaaattacgacccatcgccgtagtcaagggataa
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