Ostreococcus tauri: OT_ostta11g00220
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Entry
OT_ostta11g00220 CDS
T01358
Name
(RefSeq) RNA recognition motif, spliceosomal PrP8
KO
K12856
pre-mRNA-processing factor 8
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta11g00220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta11g00220
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
OT_ostta11g00220
Complex C
U5 SnRNP specific factors
OT_ostta11g00220
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
9835845
NCBI-ProteinID:
XP_022839881
OrcAE:
OT_ostta11g00220
UniProt:
A0A090N4A3
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All DBs
Position
11:complement(<49120..>56219)
Genome browser
AA seq
2327 aa
AA seq
DB search
MEDADGDDVAPTEAMMEKARKWQTLNAKRYSSTRKFGYVEPAKEEMPPEHVRKIIKDHGD
MSSRKFRHDKRVYLGALKFVPHAVYKLLENMPMPWEQVRHCSVIYHITGAITFVNETPRV
IEPVFIAQWGTMWIMMRREKRDRKHFKRMRFPPFDDEEPPLDYADNLLDVDPLEPINMEL
DPEEDAHVEEWFYDHAPLKWTKFVNGSSYRNWQLPLPVMGNLHRLASQLLSDLTDKNYFY
LFDHKSFFTAKALGMCIPGGPKFEPLFRDMDRADEDWNEFNDINKLIIRSALRTEYKVAF
PYLYNNRPRKVALATYHSPMVMFIKTEDPDLPAYYYDPLIHPIAFYRSNKDKASTSQDDD
ESDEEFQLPVGIEPFLEETPLYTENTASGIALLYAPRPFNLRSGRMRRAMDVPLVNNWFH
EHCPSGYPVKVRVSYQKLLKSFVLNELHKRPPKSTKRRNLFVALKKTKFFQCTELDWVEA
GLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLR
LTKLIVDSNVQFRLGNIDAYQLADGLQYCFSHVGQLTGMYRYKYKLMRQIRMCKDLKHLI
YYRFNSGPVGKGPGVGFWAPMWRVWLFFLRGIVPLLERWLGNLLARQFEGRNNKGIAKTV
TKQRIESHFDLELRAAVMHDILDAMPEGVKQNKARTILAHLSEAWRCFKANIPWKVPGMP
APIENMILRYVKSKADWWTNVTHYNRERIRRGATVDKTVCRKNLGRLTRLYLKAEQERQH
NYLKDGPYVTPEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDRKLLILALERLKENYSV
AARLNQTQREELGLIEQAFDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYEIE
PLEKISDAYLDQYIWYEADKRQLFPNWIKPSDTEPAPLLVYKWCQGINNLTDVWETSEGE
CVVMLQTRFEKMFEKVDLTLLNRLMRLIVDHNIADYCTAKNNVVISYKDMQHTNSYGMIR
GLQFASFMTQYYGLVLDLLLLGLTRASEIAGPPNMPNEFISYRDVETETRHPIRLYSRYI
DKVHVLFRFNAEESRDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRA
VFWDIKNRLPRSLTTLEWDSGFVSVYSRDNPNLLFSMCGFEVRILPKIRMATEYFANKDG
VWNLSNEQTKERTAQAFLRVDDEALKGFENRIRQVLMSSGATTFSKIVNKWNTALIGLMT
YYREATIHTSELLDLLVKCENKIQTRVKIGLNSKMPSRFPPCVFFSPKEIGGLGMLSMGH
ILIPQSDLRYSVQTDSGITHFRSGMTHEEDQLIPNLFRYIQPWEAEFNDSQRVWAEYALK
RQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWRVRLAFKEYNLTRQNP
FWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEQS
MQYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKIS
LIQIFRAHLWQKIHESVVMDMCNVFDQELDSLEIETVQKETIHPRKSYKMNSSCADILLF
AAYKWSICKPSLMGDTNDAFDQKSSNKFWVDIQLRWGDFDSHDIERYTRAKFLDYTTDSM
SIYPSPTGAMIGIDLAYNLHSAYGNWFPGCKPLVQQAMAKIMKANPALYVLRERIRKGLQ
LYSSEPTEPYLNSQNYGELFSNQTIWFVDDTNVYRVTIHKTFEGNLVTKPINGAIFIFNP
RTGQLFLKIIHTSVWAGQKRLAQLAKWKTAEEVAALIRSLPIEEQPKQIIVTRKGMLDPL
ETHMLDYPNIVIKGSELQLPFQACMKIEKFGDLILKATEPQMVLFNIYDDWLKTISSYTA
FSRLILILRALHVNNEKAKMMLRPDKSVVTLPHHVWPDLTDEQWIKVEIALKDLILADYS
AKNNVNVSALTQSEVRDIILGAEITPPSVQRQEIADIEKRGQDANQQIAVTTKTTNVHGD
ELIVTTTSPYEQATFGSKTDWRIRAISATNLHLRVNHIYVNSDDLKETGYTYIMPKNVLK
KFIMIADLRTQIAGYMYGVSPPDNPQVKEIRCVVMPPQWGNHSSVNLPSALPEHDYLSDL
EPLGWIHTQPNESSQLQPQDCTQHAKILEQNTSWDGEKCIILTCSFTPGSCSLTAYKITP
GGYEWGRANKDMTSTNPQGYSPGHFEKVQMLLSDRFLGYYMVPDGGSWNYSFQGVKHSAG
MKYALKLGNPLEFYHEKHRPTHFLEFASLEAEKPEETAPMDREDVFA
NT seq
6984 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgcggatggcgacgacgtcgcgcccacggaggcgatgatggagaaggcgaga
aagtggcaaacgctgaacgcgaagaggtatagttcgacgagaaagtttgggtacgtcgaa
ccggcgaaggaggagatgcctccggaacacgtacggaagatcattaaggatcacggggac
atgtcgagtaggaagtttcggcacgacaagcgcgtgtacttgggggcgcttaaattcgtc
ccgcacgcggtgtacaagctcctagagaatatgccgatgccctgggaacaggtgcgacac
tgctcggtgatttatcacatcacgggcgcgatcacgttcgtgaatgagacgccgcgagtg
atagagccggtgttcatcgcgcagtgggggacgatgtggatcatgatgagaagggagaag
agagacagaaagcatttcaagcgcatgcggttcccgccgttcgacgacgaagaacctccg
ctcgattacgcggataacttgttggacgtcgacccgttggagccgatcaatatggaactc
gatccggaggaggatgcgcacgtggaggagtggttctacgaccacgctccgctgaagtgg
accaagttcgtcaacggctcgagctaccgcaactggcagctcccgcttccagtgatgggt
aacttgcatagacttgcgtcgcagctactgagcgatttgacggacaagaattacttttac
ctcttcgatcacaaatccttcttcaccgccaaggcgttggggatgtgcatcccgggtggt
ccaaaattcgagccgcttttcagagacatggatcgggcggacgaagattggaacgaattt
aacgatatcaataagctcatcattcgcagcgcgctacgaacggaatacaaggtggcgttt
ccgtacttgtacaacaaccgtccgcgcaaggtggcgctcgcgacgtaccactcgccgatg
gtgatgttcatcaagacggaggatccggacttgccagcgtattactatgatcccttgatc
cacccgattgcgttttatagatcgaacaaggacaaggcgtcgacgtcgcaggatgacgat
gagagtgatgaggaattccaacttccggttggcattgagcctttcttagaagagacgccg
ctgtacacagagaacacggcgagcggcatcgcgttgctgtacgcgcctcggccgttcaac
cttaggagtgggcgcatgcgccgcgccatggacgtcccgttggtgaataactggttccac
gagcactgcccgtcggggtatcctgtcaaggtgcgcgtgtcgtaccaaaagttgttgaag
agttttgtgttaaacgagttgcacaagcgaccgccaaagtcgaccaagcggcgaaatctc
ttcgtggcgctcaagaagacgaagttcttccagtgcacggagctcgactgggtcgaggcg
ggtttgcaagtgtgcagacaaggctacaacatgctcaacctgttgattcaccgcaagaac
ctgaactatttgcacttggattacaacttcaacttgaaacctgtgaagacactgacgacc
aaggagcgtaagaagagtcgattcgggaacgcgttccacctttgccgagaagttcttcgt
ctcacaaagctcatcgtggactcaaacgtgcaattccgcctcggcaacattgatgcgtat
caactggcggacggtttgcagtactgtttttctcacgtcggtcaactgacggggatgtac
agatacaagtacaaactcatgagacagatcagaatgtgcaaggatctcaagcacttgatc
tattatagattcaactcaggtccagttggtaaaggtccaggcgtcggcttctgggcgccg
atgtggcgcgtgtggctcttcttcttgcgaggcatcgtgccgttgctcgagcgctggttg
ggcaacttgctcgcgcgccaattcgagggtcgtaataacaagggcatcgccaaaacggtc
acgaagcagcgcatcgagtcacacttcgatctcgaattgcgcgccgccgtcatgcacgac
atcttggacgccatgcctgagggcgtgaagcaaaacaaggcgcgaacgattctcgcgcac
ctttcagaggcatggagatgcttcaaggctaacattccgtggaaggtgccggggatgccc
gcgccaatcgagaacatgattctgagatacgtcaagagtaaggctgactggtggacgaac
gtcacgcactacaaccgtgaacggattcgtcgcggtgcgacagtggacaagaccgtctgc
cgcaaaaacctcgggcgattgacgcgtctgtacctcaaggcagagcaagaacgtcagcac
aactatctgaaggatggtccttacgtaactccggaagaggcggttgcgatttacacgaca
acggtgcattggctcgaatcgcgcagattctctccgattccgttcccgccgttgtcctac
aaacacgatcgaaagcttttgattttggcccttgagcgtctcaaggagaactactcagtc
gccgctcgtttgaaccaaacccagcgtgaagagttgggattgatcgagcaagctttcgac
aacccgcacgaggcgctgagtagaatcaagcgacatctgttgactcagcgcgcgttcaag
gaagtgggcatcgaattcatggacctatactcgcacttgatcccggtctacgagatcgaa
cctttggaaaagatttcagacgcgtacctcgatcagtacatctggtacgaggccgacaag
cgtcagctcttccccaactggatcaagccgtccgacacggaacctgccccgctgttggtg
tacaagtggtgccaagggatcaacaacttgacagatgtttgggaaacgagtgagggcgag
tgcgtggtgatgttacagacacgatttgaaaagatgtttgaaaaggtcgatctcaccctg
ctcaaccgtctcatgcgtttgattgtggatcacaatatcgccgattactgtacggcaaag
aacaacgtcgtcatttcgtataaggacatgcagcacacgaacagttacggcatgattcgc
ggcttgcagtttgcctccttcatgacgcagtactacgggttggttttggatttgcttctc
ctcggtttgacgcgtgcgtcagaaattgcgggtccgccgaacatgccgaacgagttcatt
tcataccgcgatgtcgagaccgagacgcggcatcccatccgtttgtactctcgctacatt
gacaaggtgcacgtcttgttcagatttaatgcggaagagtcgcgcgatttgattcagcgc
tatctcaccgagcacccggatccgaacaacgaaaacatggtaggttacaacaacaagaag
tgctggcctcgcgacgcgcgaatgcgtctgatgaagcacgacgtgaacttgggccgagct
gtgttctgggacatcaagaaccgtctgcctagatcgttgacgacgctcgagtgggacagc
ggtttcgtgagcgtgtactctcgcgacaacccgaacttgttgttctccatgtgcggattc
gaagttcgaatcttacccaagatccgcatggcgaccgagtactttgccaacaaggatggc
gtatggaacttgagcaatgaacagaccaaggagcgaactgctcaggcgttcttgcgcgtc
gacgacgaagctctcaagggattcgaaaaccgcatccggcaagtgttgatgtcttctgga
gcgactacgttctcaaagatagtcaacaaatggaacaccgcgttgattggcttgatgacg
tactacagagaggcgacgattcacacctctgagcttctcgatctgttggtgaagtgcgag
aacaagattcagacgagagtgaagataggtttgaactccaagatgccgagcagattcccg
ccctgcgtcttcttctcgccaaaggagatcggcggtctcggtatgctttcgatgggtcac
atcttgattccccagagcgatctgcgatacagcgtacaaaccgactctggcatcacgcac
ttccgatctggaatgacgcacgaagaggatcagctcattccgaacctcttccgctacatc
caaccctgggaggccgagttcaacgactctcagcgcgtgtgggctgaatacgcgttgaag
cgtcaagaggctcaggcgcagaaccgacgtctgactctcgaggatttggaagattcatgg
gatcgcggtattccgcgcatcaatactttgttccaaaaggatcgtcacacacttgcttac
gacaagggttggcgcgtgcgattagcctttaaggagtataacctgacgagacaaaatccg
ttctggtggactcatcaacgacacgacggcaaactttggaacctaaacaactaccgcact
gacgtcattcaggctctcggcggcgttgaaggtattcttgagcacactctcttcaagggg
acttacttccccacgtgggaaggcttgttctgggaaaaagcgtcaggattcgagcagtcc
atgcagtacaagaagttgacgaacgctcagcgcagtggtttgaatcaaattccgaacaga
cgtttcactttatggtggtcccccacgatcaaccgcgccaacgtgtacgtcggtttccaa
gtgcagcttgatttgactggaattttcatgcacggtaagatcccgacgttgaagatttcg
ttgattcaaatcttccgcgcgcacttgtggcaaaagattcatgagtctgtggtcatggac
atgtgcaacgtgtttgatcaagaactcgactcccttgaaatcgagacggttcaaaaggag
actattcacccgcgtaagtcatacaagatgaacagctcctgcgcagacatcttgctcttc
gcagcttacaaatggtcaatttgtaagccatctctcatgggcgacacgaatgatgcgttc
gaccagaagagctcgaacaagttctgggtcgatattcaacttcgttggggtgactttgat
tcgcacgacatcgagcgctacacgcgcgcaaagtttttggattacaccacagacagcatg
tccatttacccgtcaccaactggcgcaatgattggcatcgacttggcctacaacctacat
tcagcgtacggtaactggttccccgggtgcaaacctttggtgcagcaagccatggcgaag
atcatgaaggcgaatccggccttatacgtcttgcgcgagcgcatccgcaagggtctgcag
ttatactcgtccgaaccgacggagccgtacctcaactcgcaaaattacggcgagctgttc
agtaaccaaactatctggttcgtcgacgataccaatgtgtaccgcgtgacgattcacaag
acttttgagggtaacttggtgaccaagccaatcaacggagcgattttcatcttcaacccg
cgcactggccaactcttcctgaagatcattcacacgagcgtgtgggctggtcaaaaacgt
ctcgcgcagcttgcgaaatggaagaccgcggaagaagttgcggcgctaattcgttcgctt
ccgatcgaagagcaaccgaagcaaatcatcgtcacgagaaagggcatgctcgatccactt
gagacgcacatgcttgattatccaaacatcgtcatcaagggaagcgaattgcaactgccg
ttccaagcttgcatgaagattgagaagtttggtgatctaattttgaaggcgacggagccg
cagatggtgctcttcaacatttacgatgattggctgaagaccatctctagctacaccgct
ttcagccgcttgatcttaattcttcgcgccctccacgtgaacaacgagaaggccaaaatg
atgttgcgtccagacaagagcgtcgtcacgctcccgcaccatgtgtggccagacctgacc
gacgagcagtggatcaaggttgaaatcgcgctcaaggacttgatcttggccgactactcg
gcgaagaacaacgtcaacgtttccgcgttgacgcaaagcgaagtgcgagacattatactc
ggtgccgagattacgccgccgtccgtacaacgccaagagattgcagatattgagaagcgt
ggtcaagacgcgaaccaacagatcgctgtcacgacgaagaccaccaacgtccacggcgac
gagctcatcgtcactacgacgagcccttacgaacaggcgacgtttggaagcaagacagat
tggcgcattcgggcaattagcgccaccaatctgcacttgcgcgttaaccacatctacgtg
aacagcgacgacttgaaggagaccggttacacgtacatcatgccgaaaaatgtgttgaag
aagttcatcatgatagcagacttgcgaacacaaatcgccggctatatgtacggagtctcc
cctccagacaatccgcaagtcaaggaaattcgctgcgtcgtgatgccgccgcagtggggt
aatcacagctcggtgaacttgccgtccgcgctcccggaacacgactacttgagcgacttg
gaaccgttgggttggatccacactcaaccaaatgagagttcgcagttgcaaccgcaagac
tgcacgcaacatgctaagattttggagcaaaacacatcttgggatggtgagaagtgcata
attttgacgtgctcgtttacgcccggttcttgttcgctgacggcgtacaaaatcacgccg
ggtggctacgagtggggacgagcaaacaaggacatgacgagcacgaacccgcaaggatac
tctccgggacatttcgaaaaggtgcaaatgcttctttccgatcgtttcttgggctattat
atggttccggatggcggttcgtggaactactcgttccaaggcgttaagcactccgcaggc
atgaagtacgcgctcaaactcggaaatccgctcgagttctatcacgaaaagcatcgaccg
acgcacttcctagaatttgcctcgctcgaagcggaaaaaccagaggagacggcgccgatg
gatcgagaagatgtcttcgcataa
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integrated database retrieval system
