KEGG   Ostreococcus tauri: OT_ostta11g03250
Entry
OT_ostta11g03250  CDS       T01358                                 
Name
(RefSeq) WD40 repeat
  KO
K14004  protein transport protein SEC13
Organism
ota  Ostreococcus tauri
Pathway
ota03013  Nucleocytoplasmic transport
ota04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    OT_ostta11g03250
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    OT_ostta11g03250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta11g03250
   04131 Membrane trafficking [BR:ota04131]
    OT_ostta11g03250
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     OT_ostta11g03250
Membrane trafficking [BR:ota04131]
 Protein recycling
  Rab GTPases and associated proteins
   Rab11 associated proteins
    OT_ostta11g03250
 Endoplasmic reticulum (ER) - Golgi transport
  Forward pathways
   Coat protein complex II (COP-II)
    OT_ostta11g03250
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    OT_ostta11g03250
SSDB
Motif
Pfam: WD40 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_EML_2 ANAPC4_WD40 Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd WDR55 EIF3I Beta-prop_EIPR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_2nd WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_SCAP NBCH_WD40
Other DBs
NCBI-GeneID: 9835798
NCBI-ProteinID: XP_003082148
OrcAE: OT_ostta11g03250
UniProt: A0A090MAJ5
LinkDB
Position
11:<580225..>581238
AA seq 337 aa
MSASTIGTFETAHSDAVHDCAYDYYGRRVATCSSDRTIKIFDVSQPISSTADDGPSATGA
GTNATLNGTSVNGVVGTPSAVIVGHDGPVWSARWAHPKFGTLLASASFDHHVMIHKEVEP
NSFVCAYKSPMGTHDGSVNACAWAPHEYGAKLASASSDGSISIISYNGASGSWSVEKIDH
AHAIGCTGVSWAPAAMPGSLVNARSGGVTTVDAKRLVTCGCDNLVKIWRFDESQNVWGCE
ATLNAHTDWVRDVAWSENLGLPMNTIASAGQDGKVFIWTQSEPRGVWQSRLLHEFGAPVW
RVSWSTMGNILAVSDGNNTVTVWKESIDGSWNQISAA
NT seq 1014 nt   +upstreamnt  +downstreamnt
atgtcggcctcgactatcgggacttttgagaccgcgcactccgacgcggtccacgactgc
gcgtacgactactatggtcgtcgagtggcgacttgctcgagcgatcgaacgattaaaatc
tttgacgtctcccagccgatctcaagcacggcggacgacggcccgagcgcgaccggagcg
gggacaaatgcgacgttaaacggaacgtccgttaacggagtcgtagggacaccgagcgcg
gtgattgtcggacacgacgggccggtgtggagtgcgcggtgggcgcatccaaaatttggc
acgcttctcgcaagcgcgagttttgatcatcacgtgatgattcacaaagaggtcgaaccc
aattcattcgtgtgcgcgtataaatcaccgatgggcacgcacgatgggagcgtgaacgcg
tgcgcttgggcaccgcacgagtacggcgcaaagctagcaagcgcgtcctcagacggatcc
atctcaatcatctcgtacaacggcgcaagcgggagctggagcgtggagaagatcgatcac
gcgcatgccataggatgtacgggtgtgtcgtgggcgccggcggcgatgccgggatctttg
gtgaatgctcgttcaggtggcgtcacgacggttgacgcaaaacgcctcgtcacgtgcggg
tgcgacaatctcgtcaaaatttggcgatttgacgaatcacaaaatgtttggggatgcgag
gcaacgcttaatgcgcacacggattgggtgcgcgacgtcgcttggagcgaaaatttgggt
ttgcccatgaatacaatagcgtcagcaggtcaggatggaaaggtgttcatctggacgcag
agtgagccacgcggagtttggcagtctcgtttgctgcacgagttcggtgcacctgtgtgg
cgcgtctcgtggagcacgatgggtaatatccttgccgtgagtgatgggaataacacggtg
acagtgtggaaggaatctatcgacggctcatggaatcagatctcggcggcgtga

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