Ostreococcus tauri: OT_ostta12g01740
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Entry
OT_ostta12g01740 CDS
T01358
Name
(RefSeq) Ribonucleoprotein LSM domain,eukaryotic/archaea-type
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta12g01740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta12g01740
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
OT_ostta12g01740
mRNA degradation factors
5'-3' decay
Lsm complex
OT_ostta12g01740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
34946295
NCBI-ProteinID:
XP_022840091
OrcAE:
OT_ostta12g01740
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Position
12:276753..277133
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AA seq
126 aa
AA seq
DB search
MADAWHLSAVASLVESLDARLLVALRDGSNIIGTLRSFDQFANIVLEDAVERVVVGRNYS
DIPLGLYIVRGENVVLMGDWGERGERAAVEGLVEVDNAEIIRAREADSAAEAMKGDILKR
MDFLDE
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcgtggcacctgagcgcggtggcgtcgctcgtggagtccctggacgcgcgc
ctgttggtggcgctgcgagacggctcgaacatcatcgggacgctgcgatcgttcgatcag
tttgcgaacatcgtgctcgaggacgcggtcgagcgcgtggtcgtgggacggaactacagc
gatatcccgcttgggttgtacatcgtgcgaggagagaacgtcgtgctcatgggggactgg
ggcgagcgaggcgagcgcgcggcggttgagggtctggtggaggtggacaacgcggagatc
attcgagcgcgcgaggcggatagcgcggcggaggcgatgaagggggatatcctaaagaga
atggatttcttggatgagtga
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