KEGG   Ostreococcus tauri: OT_ostta12g03030
Entry
OT_ostta12g03030  CDS       T01358                                 
Name
(RefSeq) Helicase, C-terminal
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
ota  Ostreococcus tauri
Pathway
ota03013  Nucleocytoplasmic transport
ota03015  mRNA surveillance pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta12g03030
  09122 Translation
   03013 Nucleocytoplasmic transport
    OT_ostta12g03030
   03015 mRNA surveillance pathway
    OT_ostta12g03030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta12g03030
   03041 Spliceosome [BR:ota03041]
    OT_ostta12g03030
   03009 Ribosome biogenesis [BR:ota03009]
    OT_ostta12g03030
   03012 Translation factors [BR:ota03012]
    OT_ostta12g03030
Enzymes [BR:ota01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OT_ostta12g03030
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     OT_ostta12g03030
   mRNA cycle factors
    Stress granule specific factors
     OT_ostta12g03030
Spliceosome [BR:ota03041]
 Complex C
  Other components
   EJC/TREX
    OT_ostta12g03030
Ribosome biogenesis [BR:ota03009]
 Eukaryotic type
  90S particles
   Helicases
    OT_ostta12g03030
Translation factors [BR:ota03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    OT_ostta12g03030
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 AAA AAA_22 CbiA
Other DBs
NCBI-GeneID: 9836075
NCBI-ProteinID: XP_003082452
OrcAE: OT_ostta12g03030
UniProt: Q00XK3
LinkDB
Position
12:complement(506554..507768)
AA seq 404 aa
MARGDDDDRVVDRDEHENVSFEVSKGIARHATFDAMGIREDLLRGLYSYGFEKPSAIQQR
AVVPIISGRDVIAQAQSGTGKTSMISLALCQMLDTTSREVQGLVLSPTRELAVQTEKTAL
ALGNFMNVQVHACIGGRSIGEDIRKLDYGCHIVSGTPGRVFDMIKRRNLRTRGIKILVLD
EADEMLNKGFKEQIYDVYRYLPPETQVVLVSATLPNEVLEMTGKFMTDPLRILVKRDELT
LEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTEKMRQNNFTVSAM
HGDMPQKEREEIMNEFRGGTTRVLITTDMWARGIDVQQVSLVINYDLPGNRENYIHRIGR
SGRYGRKGVAINFVKEEDVRALRDIEQYYSTQIDEMPMNVADMI
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggcgcgaggtgacgacgacgaccgggtggtggatcgcgatgaacacgagaacgtgtcg
tttgaggtgtccaagggaatcgcgagacacgcgacgttcgatgcgatgggaattcgtgag
gatttgttgagaggtttgtactcgtacgggtttgaaaagccgagcgcgattcaacagcgc
gcggtggtgccgatcatttcgggtagagatgtgatcgcgcaggcgcagagtggaacgggg
aagacgtctatgatttcgctggcgctgtgtcagatgctggacacgacgtcgagggaggtg
caggggttggtgctgtcgccgacgagagagttggcggtgcagacggagaagacggcgctc
gcgctcgggaactttatgaacgtgcaagtgcacgcgtgcatcgggggtaggtcgatcggt
gaggacatcagaaagctagattacggctgtcacatcgtgagcgggacgccggggcgtgtt
ttcgacatgatcaagaggcgtaacttgcgaacgcgcgggataaagattttggtcctggac
gaggcggacgaaatgttgaacaaggggttcaaggaacaaatttacgacgtgtacagatac
cttccgccggagacgcaggtggtcctagtgagtgccacgctaccgaatgaggttttggag
atgaccgggaagttcatgactgatccgctgcgcatcttggtgaagagagacgagctcacg
ctagagggtatcaagcagttttttgtcgccgtcgagcgcgaggagtggaaattcgatact
ctgtgcgacttgtacgataccctgaccatcacccaggctgtgatcttctgcaacacgaag
aagaaagtggattggctgacagagaagatgcgtcaaaacaactttactgtctctgcgatg
cacggcgacatgcctcaaaaggagcgcgaagagatcatgaatgaattccgcggcggaacc
acgcgcgtgttgataaccaccgacatgtgggcgcgcggtatcgatgttcagcaagtatcc
ttggtgatcaactacgatttgccgggaaatcgtgaaaactacattcatagaatcggtcgc
tcgggtcgttatggtcgcaagggtgtggccatcaatttcgtgaaggaggaggacgtccga
gcgttgcgcgacatcgagcaatattattccacgcaaattgatgagatgccgatgaacgtg
gctgatatgatttag

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