Ostreococcus tauri: OT_ostta12g03120
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Entry
OT_ostta12g03120 CDS
T01358
Name
(RefSeq) Ribonuclease H-like domain
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta12g03120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta12g03120
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
OT_ostta12g03120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Nop14
Motif
Other DBs
NCBI-GeneID:
9836084
NCBI-ProteinID:
XP_003082461
OrcAE:
OT_ostta12g03120
UniProt:
A0A090M712
LinkDB
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Position
12:522225..524459
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AA seq
744 aa
AA seq
DB search
MTSETYARTLARTRVGIRAAIRAATGANADDDDGASSDEDGETMFEVMRDVLDARCDAVD
ACVMLARGDDGRGATAATAGDAGGGASRGSRRDATSTRPQDAFEDAVDNRLENHSHKGLM
RPIGFDSYEDFERKAREDAYPAFARESGGTTLPTPMDDEHPLVVVDTEDALEELATHLEQ
CKEFAVDLEHHSYRSFKGFTCLMQVSTREKDFVVDVLALRSLVRDALGKAFADPNTLKVM
HGADNDVQWLQKDFGIFVSCLFDTGQAARVLELPSKALAYLLQHYCGIKANKKFQLADWR
VRPLTREMLDYARGDTHYLLYVYDELKKALAARGENSIAATLTQSRDVCLKKYLPPTFDE
GSYYEDLLKTNNLTNLNDPQLAVYAALFKWRDAAAREADESLGYVMPRELMLRLAIAAPS
TKRALMEECRGQVPLIAKHAETVADLISRARAMGAPSFKPSLVDPVDVTAVRTTANVTEP
SNATGVTTNLTASVAETTEQPERAMAPIASAPTNKTKRKRGGSMAALMGGHVTTAASSPE
IIPMHEIFNVWGDDAAPVVGTNAVATVTAAPSAATAAPKVEDSQPARRAEIEIPGLGIRV
PAPFRKAGSDLPFTMLSAEPHVVEMSRADEAAAARAELEARRAERMRGYDESDSDSDSED
ARIKADLLATADKLNDPAKRDSFTKLATERFGASGIEMFLREEDQGPKKGFNERFKSVYE
EPFKAGPKSRAFPRSGNRYTTFDK
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcgagacgtacgcgcgaacgctggcgcggacgcgggtggggattcgcgcggcg
attcgcgcggcgacgggcgcgaacgcggacgacgacgacggcgcgtcgtcggatgaagac
ggagagacgatgtttgaggtgatgcgggatgttttggacgcgcgatgcgatgcggtggac
gcgtgcgtgatgctggcgcggggggatgatggacgcggcgcgacggcggcgacggcgggc
gacgcgggcggaggcgcgtcgcgcgggtcgagacgggacgcgacgtcgacgcgaccgcag
gacgcgttcgaggatgcggtggataatagattagagaatcactcgcacaagggattgatg
cgaccgattgggttcgattcgtacgaggatttcgagcgaaaggcgcgagaggatgcgtat
cccgcctttgcgcgggagagcggcgggacgacgctcccgacgccgatggacgacgaacac
ccgctcgtggtggtcgacacggaagatgcgttagaggagctggcgacgcatttggagcag
tgtaaggagttcgcggtcgatctcgagcatcactcgtatcgatccttcaaaggtttcacg
tgcctgatgcaagtgagcacgcgcgagaaggattttgtcgtcgacgtcttggccctgcgc
tcgctcgtgcgcgatgcgctggggaaagcgttcgcggatccgaacacgctcaaggtgatg
cacggcgccgataacgacgtgcagtggcttcagaaggatttcggcatttttgtctcgtgt
ctcttcgacaccggacaagccgcgcgcgtgctcgagctcccgagcaaggcgttggcgtat
ctccttcagcactactgcggaatcaaggcgaacaaaaagtttcagctcgccgattggcga
gtgcgccctctcacgcgcgagatgttggattacgcccgaggggacacgcattacttgctg
tacgtgtacgacgagctaaaaaaggcgctcgcggcgcgaggagaaaattccatcgccgcg
acgctcacgcaaagtcgcgacgtgtgtctgaagaagtacctcccaccgacgttcgacgag
ggctcgtattacgaagatttgctcaagacaaataacttgacaaacctgaacgacccgcag
ttggcggtgtacgccgcgctgttcaagtggcgagacgccgcggcgagagaagccgatgaa
agtctaggatacgtcatgccgcgcgagctcatgcttcgtttggcgatcgccgcgccatca
acgaagcgcgcgctgatggaggagtgtcgaggacaggtcccgctcatcgccaagcacgcc
gagacggtggccgatttgatttctcgagcgcgcgccatgggagcgccgagtttcaagccg
tctctcgtcgatcccgtcgacgtgaccgcggtgaggacgacggcgaacgtcacggaaccg
tcgaacgctacgggtgtcaccaccaatctcacggcgagcgtcgcggagacgacggagcag
ccggagcgagcgatggctcccatcgcctcggcgccgacgaacaagaccaagcgcaaacgc
ggagggtcgatggcggcactcatgggaggtcacgtgaccaccgcggcgtcatcgcccgag
atcattccgatgcacgaaatattcaacgtttggggtgatgatgcggccccggtggtgggg
acgaacgcggtagcgacggtaaccgcggcgccgagcgcggcaaccgcggcgccgaaagtg
gaagactcgcagcccgcgcgacgtgcggagattgaaatacccgggttgggcatccgggtt
ccggcgccgtttcgtaaggcggggtcagatttgccgttcaccatgctcagcgctgagcct
cacgtcgtggagatgtctcgcgccgacgaagccgccgcggcgcgcgccgaactcgaggcg
cgcagagcggaacgcatgcgaggctacgacgagagcgacagcgacagcgatagcgaagac
gctcgaatcaaggcggatctactggccacggcggataagttgaacgatcctgcaaaacgc
gattcgtttacgaagctcgcgaccgagcgtttcggcgcgtcgggcatcgagatgttcctg
cgcgaggaggatcagggtccgaagaagggtttcaacgagcgcttcaagtcggtttacgag
gagcctttcaaggctggacccaagagcagagcatttccaagatcgggaaataggtacacg
acgtttgataaatag
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