Ostreococcus tauri: OT_ostta13g00270
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Entry
OT_ostta13g00270 CDS
T01358
Name
(RefSeq) Zinc finger, ZZ-type
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ota
Ostreococcus tauri
Pathway
ota03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
OT_ostta13g00270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta13g00270
03036 Chromosome and associated proteins [BR:
ota03036
]
OT_ostta13g00270
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
OT_ostta13g00270
Chromosome and associated proteins [BR:
ota03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
OT_ostta13g00270
PBAF complex
OT_ostta13g00270
GBAF(ncBAF) complex
OT_ostta13g00270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
ZZ
SWIRM-assoc_2
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_3
Motif
Other DBs
NCBI-GeneID:
9835685
NCBI-ProteinID:
XP_022840155
OrcAE:
OT_ostta13g00270
UniProt:
A0A090M6Y4
LinkDB
All DBs
Position
13:43751..46657
Genome browser
AA seq
893 aa
AA seq
DB search
MSSTVKKRASRGCRPRLRDFESREYVDAMSTILRRLRRKHASLAPSFDARALAGATFRLI
TAEEKFLGANAEREGESPRVPKIPHWAWRDVTPGGGLSTLLDVYVSRRRDGKLRAEAQGE
DARREFEAFVREAREALVERRHLKYVKIYVSDDAQGAKELKALAREMRATLAANADGSMW
RITETSTSATSGGKTEHRVHYWFYPDSYEQWYAESSLSGRGRAPWSPQTSTFARKGFDKP
FNVRARWLRDSHKFNEWMNELDYEFDITPEAALGGRHAWEAHDASLTSGKRARADVGADT
EGEMFAADGDEILSYFVTRRRVIQPHPMIAACVSQDDGALVLRDEQEDVTKTYMTAKNVR
LVNMTAGKLPPNATPLFEREERDGAKPLEELRIPTHSAWFRWDVAHEIERRALPEFFNED
NGTGDGLDRYISCRNAMIQCFMKKGRNVTMREVAPKGKSALVDAAAAARIFLFLEDWGLV
NWSFAVDRGVFKVKDDPPTGCPRIIQASDGTLEVKEMDLPEALKMELFDFAKVRATTVSG
EHPLVSPTAIAASTDAQFERRSLDELFATLQAMREVEVRFECNACGTDLIGGVFYHYTVS
GAYDLCESCFPRGAYPEGHTSGDYVKAVYPDFAANARSSASADDTEWSPQEVSSLLEAVS
QSESSVNWNDVAASVGSKNEDECIKYFVRMPTEDAAIAAIDAQLRAPNGVVVDAAAGATL
PDSEDAPFATAPNPVIAQLEFLVSMVSPRVAAASAKAALTELVKHGDRVHDIDAVKKANA
RGLVAAAVQAKILAMDEEHEIRRIVSGILDVLAKKLELKLKYLDLMDVHAERALEAFSSQ
SKTALADRRSAIAETRDYSERIVEMTAKLHSLRQRLAVEEAKIAPAAAPRVDV
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgacggtgaagaaacgggcgagtcgagggtgcagaccgagactgagagatttc
gagagtcgagagtacgtggacgcgatgtcgacgatattgcgacggttacgaaggaaacac
gcgtcgttagcgccgtcgtttgacgccagggcgttggcgggggcgacgtttcgtttgatt
acggcggaggagaagtttttaggagcgaacgcggagcgcgaaggcgagtcgccgcgggtg
ccgaagattccgcattgggcgtggagagacgtgaccccgggtggggggttgtcgacgtta
ttagatgtttacgtgagtcggcgacgagatgggaagctcagggcggaagcgcagggtgag
gacgcgcgaagagagttcgaggcgttcgtcagagaagccagagaggcgctcgtggaacgg
cgacaccttaagtacgtgaagatttacgtctcggacgacgcacagggtgcgaaagagttg
aaggcgttagcgcgggagatgcgagcgacgctcgcggcgaacgcggacgggtcgatgtgg
agaatcacagagacgtccacgagcgcgacttctggggggaagacggaacatcgcgtgcac
tattggttctatccggactcgtacgagcagtggtacgcggagagctcgctttcgggtcga
ggacgggcgccgtggtcgccgcagacgagcacgtttgcgcgcaaagggttcgacaaaccg
ttcaacgtccgagcgcgttggcttcgggatagtcataagtttaacgagtggatgaacgag
ctcgattatgagttcgacatcacccctgaggcggcgctcggtgggagacatgcatgggaa
gcgcacgacgcgtcgttgacgagcggtaaacgcgcgcgcgcggacgttggcgccgatacc
gagggcgagatgttcgccgctgacggtgacgaaatcttatcatacttcgtgacgcgtcgt
cgagtcattcaaccgcatcccatgatagccgcgtgcgtgagccaggacgacggcgcgctc
gtcttgcgtgacgagcaggaggacgtcaccaagacgtacatgacggccaagaacgtacgt
cttgtgaacatgaccgccgggaagcttccaccgaacgcgacgccattgtttgagcgcgag
gaacgagacggcgcgaagcctttggaagaactcaggattcctacacatagtgcgtggttc
agatgggacgtcgcgcacgaaatcgagcgccgagcgctgccggaattcttcaacgaagac
aatggcacgggagatggattagatcgatacatttcgtgtagaaatgcgatgattcaatgt
tttatgaaaaagggacgaaacgtgacgatgcgtgaagtcgcgccgaagggcaagtcagcg
ctggtcgacgccgcagccgcggcgaggatatttttatttctagaggattggggactggtg
aactggagcttcgccgtcgatcgaggcgtattcaaggtgaaggacgaccctccgaccgga
tgtccccgaatcatccaagcgagcgacggcacacttgaggtgaaggagatggacctgcct
gaggcgctgaagatggagctttttgatttcgcgaaggttcgagcgacgacggtgtctggc
gaacatcccctcgtttcaccgaccgcgatcgcggcgtcgacggatgcgcagtttgagcga
cgttctttggacgaattattcgccacattgcaggcaatgcgcgaggtggaggtgcggttt
gagtgcaacgcgtgcggaactgatttgataggaggcgtcttctatcactacacagtctcg
ggcgcttacgacctatgcgagtcttgtttcccgcgaggcgcgtaccccgagggtcatacg
agtggtgattacgtcaaggcggtctacccagatttcgccgcaaacgcccgttcgagcgct
agcgcggacgacacagagtggtctccgcaggaggtgtcttctctcctcgaggctgtctct
cagagcgaatcgagcgtgaactggaacgacgtcgccgcgagcgtcggttcgaagaacgag
gacgagtgcatcaaatatttcgtgcgcatgcccacggaagacgctgcgatcgctgcgatt
gacgcgcaactgcgcgcgccgaatggcgtcgtcgtggacgccgccgccggcgcgacactt
cccgattcggaagacgcgccgttcgcgaccgcgccgaacccagtgatagcgcagctcgag
ttcctagttagcatggtttctcctcgagtcgccgcagcctcggccaaggctgcgctcacg
gagctcgtgaagcacggcgatcgagtccacgacatcgacgcggtgaaaaaggccaacgcg
cgaggcttggtcgcggccgcggtgcaggcgaagattctcgccatggacgaagagcacgag
attagacgtatcgtttccggtatcctggacgtcttggcgaagaaactcgagctcaagctc
aagtacctcgacctcatggacgtgcacgccgagcgcgcgctcgaagcgttttcgtctcag
tccaaaaccgcgctcgccgatcgaagatccgcgatcgcggagacgcgcgattacagcgag
cgtatcgtagaaatgaccgccaaactccactcgcttcgccagcgcctggctgtggaggag
gcgaaaattgcgcccgccgccgcgccccgcgtagacgtgtaa
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