Ostreococcus tauri: OT_ostta13g02520
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Entry
OT_ostta13g02520 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta13g02520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta13g02520
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta13g02520
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OT_ostta13g02520
Spliceosome [BR:
ota03041
]
Complex A
U1 snRNP components
U1 related factors
OT_ostta13g02520
Complex B
OT_ostta13g02520
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
Pre-60S particles
Helicases
OT_ostta13g02520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
CMS1
Motif
Other DBs
NCBI-GeneID:
34946343
NCBI-ProteinID:
XP_022840243
OrcAE:
OT_ostta13g02520
UniProt:
A0A096P859
LinkDB
All DBs
Position
13:435174..436595
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AA seq
473 aa
AA seq
DB search
MSTTRDDYERSRAGRDARRVELAMSTVRDADVEEVREGFAFEKNFYVEHPATARRSLAEN
EGTMKRMEIRVTRGGVDAPKCVLTFTEASFPSYVTEDLLREKFEAPSAAQSLAWPSALSG
RDVVAVAETGSGKTLAYVLPAIVHVNAQPVLAPGEGPIALVLAPTRELACQIELEVAKYA
ASSQLKHACVYGGAPKGPQVKALKSGECEICVATPGRLIDFLERGVTNLRRTTFVVLDEA
DRMLDMGFEPQIRRIVSQTRPDRQTLLFTATWPVEVREIARTLVRNNPVEFRVSGAGDSL
LASKNVEQIVHVMNGDEEDKYEKLIETLEREMDGERLLVFVETKASVDALTRKLRVGGWP
ALGLHGDKEQKERDWVLSEFKSGSSPIMIATDVASRGLDVEGVKLVVNYDFPNRGGVEEY
VHRIGRTGRAGRLGKSVTFFTIRDGRHARGLVDVLRSSGQRVPDALANAAADS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaccacgcgcgacgattacgagcgctcgagggcgggacgagacgcgcgacgggtc
gaactcgcgatgtccacggtgcgcgatgccgacgtcgaggaggtgcgcgaggggttcgcg
tttgagaagaatttttacgtcgagcacccggcgacggcgcgtcggtcgctcgcggagaac
gaggggacgatgaagcgcatggagatccgagtgacgcgaggtggcgtcgacgcgccgaag
tgcgtgttgacttttaccgaggcgtcttttccgtcgtacgtgacggaggatctgttgcga
gagaagtttgaggctccgagcgcggcgcagtcgctcgcgtggccgagcgcgctgagcgga
cgggacgtcgtcgcggtggcggagaccgggtcggggaagacgctcgcgtacgtactgccg
gcgatcgtgcacgtgaacgcgcaaccggttttggcgccgggggaagggccgatcgcgctc
gtgttggcgccgacgcgagagttggcgtgtcaaatcgagctcgaggtggcgaaatacgcc
gcgtcgagtcaactgaagcacgcgtgcgtgtacgggggagcgcccaaagggccgcaggtg
aaggctctaaaatcgggcgagtgtgagatttgtgtcgccacaccgggacggttgattgat
ttcttagagaggggcgtgacaaatctcaggagaacgacattcgtcgtcttagacgaggct
gatcgcatgttagacatgggcttcgaacctcaaattcgtaggatagtgtctcagacgaga
cccgatagacagactcttttgttcaccgcgacgtggccggtcgaggtgagagagatagcg
cgaacacttgttcgcaacaatccggtggaatttcgagtcagcggcgccggtgatagtttg
ttagcgtccaaaaatgttgagcaaatcgtccacgtaatgaacggcgatgaagaggacaaa
tatgaaaagctcatcgagacacttgagcgagagatggacggcgaacggttgctcgtgttc
gtggagaccaaggcctcggtggacgcgctcacgcgcaagcttcgagtcggcggttggccc
gcattaggattacacggcgacaaggagcaaaaagagcgcgactgggttctcagcgagttt
aaaagcggctcttctccgatcatgatcgctaccgacgtcgcctcacgcggtcttgacgtt
gagggtgtgaagctcgttgtgaactacgatttcccgaaccgcggcggcgtggaggagtac
gtccacagaatcggtaggaccggcagagcagggcgactcggcaaatccgtaacgtttttc
accattcgcgacgggcgacacgcgagaggtttggtggacgtcttacgctccagcggccaa
cgcgtcccggacgcgctcgcaaacgccgccgccgattcgtag
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