Ostreococcus tauri: OT_ostta14g00300
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Entry
OT_ostta14g00300 CDS
T01358
Name
(RefSeq) Splicing factor motif
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta14g00300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta14g00300
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
OT_ostta14g00300
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_EIPR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
WD40_RFWD3
Beta-prop_RIG_2nd
NBCH_WD40
WDR90_beta-prop_4th
WD40_like
Beta-prop_DCAF4
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
9837640
NCBI-ProteinID:
XP_003082831
OrcAE:
OT_ostta14g00300
UniProt:
Q00WH2
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All DBs
Position
14:62506..63873
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AA seq
455 aa
AA seq
DB search
MARAVARRREIVEKFESRRKLRATTVPTNDAATRAELRRRGEPVTLFGEREGDRRERLRG
ILAALDAADGGELERGGADAEDDAMDADGAPERGRQRETFFTEGVKGLLECRVAMAEFSL
PRAAKRVREERVRNADARGLAKTLDAIVASTSGFAAQCSEIGDDTRPIACARAFDDGRRA
VTGSWSGEARVWKIDAPTGRMTSELVIRCTDHRITGVDAVANVIATAHADGTAAIWNAND
GSRARELKGRHAARCGNIAFHPSGARYVATAGFDATWRLWNVETGDELLCQEGHAKEVYD
VAFHPDGGLAASVGLDAVGRVWDLRIGRAIGNPLRGHVKQILSCDFHPNGTHIVTGSGDN
TAKAWDLRRANECVYTMANHENLISQVRYAPNGAFLLSASYDGTVNAYDARDFSLNKKIV
VCTGSGATKITCCDVAADDALIIGCFDRTVKLYTK
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgcgcggtggcgcggcgacgagagattgtggagaaatttgagtcgagacgaaaa
ctacgagcgacgacggtgccgacgaacgacgcggcgacgcgggccgagctgcgcaggcgc
ggtgagccggtgacgctgttcggtgagcgcgagggtgatcggcgcgagcgcctgcgaggg
atcctcgcggcgttggacgcggcggacgggggcgaactcgaacgcggcggcgcggacgcg
gaggacgacgccatggacgcggacggcgcgccggagcgaggacgacagagggagacattt
tttaccgagggtgtcaagggactgctggagtgtcgagtggcgatggcggagttttcgctg
ccgcgcgcggcgaagcgcgtgcgagaggaacgggtgagaaacgccgacgcgagaggttta
gcgaagacgctggacgccatcgtcgcctccacctcgggattcgcggcgcaatgcagtgag
attggggatgatacgcggccgatcgcgtgcgcgcgcgcgttcgacgacgggcgcagggcg
gtgacggggagttggagcggcgaggcgcgtgtgtggaaaatcgacgcgcccacgggacgg
atgacgtccgagctcgtcatcagatgcaccgatcacagaatcacgggcgtggacgcggtc
gcgaacgtgatcgccaccgcgcacgccgacgggactgcggcgatttggaacgcgaacgat
ggctctcgcgcgcgagagctcaagggtcgacacgccgcgcggtgcggaaatattgccttc
catccgagcggagcgcgatacgtcgccaccgccggattcgacgcgacgtggcgactgtgg
aacgtcgagaccggggacgaacttctgtgtcaggaaggtcacgcgaaggaggtgtacgac
gtggcgtttcaccccgacggcggcttggcggcgagcgtcggtctagacgccgtcggtcgc
gtgtgggatctgcgaatcggtcgggcgatcggaaacccgctcaggggacacgtgaaacaa
atcttgagttgtgacttccatccaaacggcacgcacatcgtcaccggaagcggcgacaac
acggccaaggcgtgggatttgagacgcgcgaacgagtgcgtgtacacgatggcgaatcac
gaaaacttgatcagtcaggttcggtacgcaccaaacggcgcctttttactctccgcgagt
tacgacggcaccgtgaacgcgtacgacgctcgagatttttcgttgaacaaaaaaatcgtc
gtatgtaccggtagcggcgcgacgaaaatcacgtgctgcgacgtcgccgccgacgacgcc
ttaatcatcggctgcttcgatcgcaccgtgaaactgtacacgaagtaa
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