KEGG   Ostreococcus tauri: OT_ostta14g00300
Entry
OT_ostta14g00300  CDS       T01358                                 
Name
(RefSeq) Splicing factor motif
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
ota  Ostreococcus tauri
Pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta14g00300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ota03041]
    OT_ostta14g00300
Spliceosome [BR:ota03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    OT_ostta14g00300
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_EML_2 WDR55 WD40_CDC20-Fz EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_1st PRP4 Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_WDR75_1st Beta-prop_IFT122_1st WD40_RFWD3 Beta-prop_RIG_2nd NBCH_WD40 WDR90_beta-prop_4th WD40_like Beta-prop_DCAF4 Beta-prop_SPT8
Other DBs
NCBI-GeneID: 9837640
NCBI-ProteinID: XP_003082831
OrcAE: OT_ostta14g00300
UniProt: Q00WH2
LinkDB
Position
14:62506..63873
AA seq 455 aa
MARAVARRREIVEKFESRRKLRATTVPTNDAATRAELRRRGEPVTLFGEREGDRRERLRG
ILAALDAADGGELERGGADAEDDAMDADGAPERGRQRETFFTEGVKGLLECRVAMAEFSL
PRAAKRVREERVRNADARGLAKTLDAIVASTSGFAAQCSEIGDDTRPIACARAFDDGRRA
VTGSWSGEARVWKIDAPTGRMTSELVIRCTDHRITGVDAVANVIATAHADGTAAIWNAND
GSRARELKGRHAARCGNIAFHPSGARYVATAGFDATWRLWNVETGDELLCQEGHAKEVYD
VAFHPDGGLAASVGLDAVGRVWDLRIGRAIGNPLRGHVKQILSCDFHPNGTHIVTGSGDN
TAKAWDLRRANECVYTMANHENLISQVRYAPNGAFLLSASYDGTVNAYDARDFSLNKKIV
VCTGSGATKITCCDVAADDALIIGCFDRTVKLYTK
NT seq 1368 nt   +upstreamnt  +downstreamnt
atggcgcgcgcggtggcgcggcgacgagagattgtggagaaatttgagtcgagacgaaaa
ctacgagcgacgacggtgccgacgaacgacgcggcgacgcgggccgagctgcgcaggcgc
ggtgagccggtgacgctgttcggtgagcgcgagggtgatcggcgcgagcgcctgcgaggg
atcctcgcggcgttggacgcggcggacgggggcgaactcgaacgcggcggcgcggacgcg
gaggacgacgccatggacgcggacggcgcgccggagcgaggacgacagagggagacattt
tttaccgagggtgtcaagggactgctggagtgtcgagtggcgatggcggagttttcgctg
ccgcgcgcggcgaagcgcgtgcgagaggaacgggtgagaaacgccgacgcgagaggttta
gcgaagacgctggacgccatcgtcgcctccacctcgggattcgcggcgcaatgcagtgag
attggggatgatacgcggccgatcgcgtgcgcgcgcgcgttcgacgacgggcgcagggcg
gtgacggggagttggagcggcgaggcgcgtgtgtggaaaatcgacgcgcccacgggacgg
atgacgtccgagctcgtcatcagatgcaccgatcacagaatcacgggcgtggacgcggtc
gcgaacgtgatcgccaccgcgcacgccgacgggactgcggcgatttggaacgcgaacgat
ggctctcgcgcgcgagagctcaagggtcgacacgccgcgcggtgcggaaatattgccttc
catccgagcggagcgcgatacgtcgccaccgccggattcgacgcgacgtggcgactgtgg
aacgtcgagaccggggacgaacttctgtgtcaggaaggtcacgcgaaggaggtgtacgac
gtggcgtttcaccccgacggcggcttggcggcgagcgtcggtctagacgccgtcggtcgc
gtgtgggatctgcgaatcggtcgggcgatcggaaacccgctcaggggacacgtgaaacaa
atcttgagttgtgacttccatccaaacggcacgcacatcgtcaccggaagcggcgacaac
acggccaaggcgtgggatttgagacgcgcgaacgagtgcgtgtacacgatggcgaatcac
gaaaacttgatcagtcaggttcggtacgcaccaaacggcgcctttttactctccgcgagt
tacgacggcaccgtgaacgcgtacgacgctcgagatttttcgttgaacaaaaaaatcgtc
gtatgtaccggtagcggcgcgacgaaaatcacgtgctgcgacgtcgccgccgacgacgcc
ttaatcatcggctgcttcgatcgcaccgtgaaactgtacacgaagtaa

DBGET integrated database retrieval system