Ostreococcus tauri: OT_ostta14g00370
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Entry
OT_ostta14g00370 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta14g00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta14g00370
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OT_ostta14g00370
Spliceosome [BR:
ota03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
OT_ostta14g00370
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
nSTAND3
AAA_19
Cas3-like_C_2
nSTAND_NTPase5
SRP54
ABC_tran
IATP
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
9837647
NCBI-ProteinID:
XP_003082838
OrcAE:
OT_ostta14g00370
UniProt:
A0A096PBI4
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All DBs
Position
14:<70162..>73419
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AA seq
1085 aa
AA seq
DB search
MTLDDVIRDGLHDLLGMSARALESFVADAASRVDFNPHALTTELVHAGLSSDDGARAFAE
RVCACGRDGRDARERAPRAVVAAAAGSSFAAADAYALVEATPSSSENDDATVSRGRRRAE
KRGKKLRRRAVDDGGSSEEDAVAAATRRVALGRARGTRDDDAETTPESESEETTRRREME
EDARERDAFEERLRARDAAKTKKVNEREPSEAERAEAERRGARLESDAQRMDLVPELRKV
SRQEYLKKRELQKLEELKESIRETEYFYEGQDVTEEQRADLEKRKKVYELAMEQINSINE
ALEERYQIPTAYDDPNKPKSMNERFAVARQRYKEPDPEDDANPFKDQDRWEAHQVKQAQT
QFGAKNKKTEEKQYDLLYDDQIKFIKDEIMAGDGVSDESDGDDVSDRSDESEMDEEKRTK
LALAGKLGKRAKIEADRKSLPIFPYRDGLIKAVEDHQVVVIVGETGSGKTTQIPQYMWEA
GFGGKTQKIGCTQPRRVAAMSVAARVAEEAGVKLGHEVGYSIRFEDCTNDKTRLKYMTDG
MLLREFLGEPDLSSYAVMMVDEAHERTLHTDVLFGLVKDIARFRPEIKLLISSATLDAEK
FSEYFDFAPIFRIPGRRFPVDILYTQQPEADYVDASVVTILQIHLTQPEGDILVFCTGQE
EIENIEELLKTRIHEMEKKPPELIIAPIYSSLPSDLQAKIFEDPPKGARKVVLATNIAET
SLTIDGIKYVIDPGFCKQKSYNPRTGMESLVVTPTSQASALQRAGRAGRTSAGKCFRLYT
AWSFQNELDPNTVPEIQRTNLGNVVLMLKSLGINDLMNFDFMDPPPAETLLRALEQLYAL
GALNDRGELTKLGRKMAEFPLDPMLSKTLCASDKYKVSDEVMTICCMLSCGNAVFYRPKD
KLQLADHAHKAFHIGNPGDHIALLNVYNSWRDADFSVTWCYENFVQQRTMKTARDIREQL
EKLLERVEIEPSSNPNDIDGIKKCITSGFFYHTAKLQKNGSYRTVKNPQTVAIHPSSGLA
KELPRWVVYFELVYTSKEYMRQVIEIKPEWLVEIAPHYYKRKEIEGETIKMGKAGTGKKS
DVVLA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgacgctcgacgacgtcatccgagacggcctccacgacctcctcgggatgtccgcgcgc
gcgctcgagtccttcgtcgcggacgcggcgtcgagggttgatttcaatccacacgcgttg
accaccgagctcgtccacgccgggctctcgagcgacgacggcgcgcgcgcgttcgccgag
cgcgtgtgcgcgtgcggtcgcgacgggcgagacgcgcgcgagcgggcgccgagggcggtg
gtggcggcggcggctggatcatcattcgcggcggcggacgcgtacgcgctcgtggaggcg
acgccgtcgagctcggagaacgacgacgcgacggtgtctcgagggcgacggcgcgcggag
aaacgtgggaagaagctgcggcgacgggcggtggatgacggggggtcgagcgaggaggac
gcggtggcggcggcgacgcggcgggtcgcgctcgggcgggcgcgggggacgcgggacgac
gacgcggagacgacgccggagagcgagagcgaggagacgacgcggcgacgggagatggag
gaggatgcgcgggagcgggatgcgtttgaggaacggttgcgggcgagggatgcggcgaag
acgaaaaaggtgaatgagcgagagccgagcgaggcggagcgcgccgaggcggaacgacga
ggggcgcgtctcgagagcgatgcgcagcgcatggatctcgttccggagcttcgtaaggtg
tcgagacaggagtacttgaagaagcgcgaactccaaaaactcgaagaactcaaggaatcg
attcgtgagacggagtacttttacgaaggccaagacgtgactgaggaacaacgggcggat
ctcgagaagaggaaaaaggtgtacgagctcgcgatggaacagatcaatagcattaacgag
gcgctggaggagcggtatcaaattcccacggcgtatgacgatccgaacaagcctaaatcg
atgaacgagcggttcgccgtcgcgagacagcggtacaaggagccggatccggaggacgac
gccaacccgttcaaggatcaggatcgatgggaggcgcatcaggtgaagcaagcgcagacg
cagttcggggcgaaaaataaaaagacagaggagaagcagtacgatctcctgtacgacgat
cagatcaagttcattaaggatgaaatcatggcgggagacggcgtatccgatgagagcgac
ggcgacgacgtctccgatcggagcgacgagagcgagatggatgaggagaagcgcacgaag
ctggcgttggcagggaagcttggaaagcgggcgaagatcgaagcagatcgtaaatcgctg
ccgattttcccatatcgcgatggtctcatcaaggctgtcgaggatcatcaagtcgtcgtc
atcgtcggcgaaaccggttcgggcaaaacgacgcagattcctcaatacatgtgggaggct
ggcttcggtgggaagacgcaaaagattggatgcacacagccgagacgcgtcgccgcgatg
tctgtcgcggcgcgcgtcgccgaagaggctggggtcaagcttggacacgaagtgggttac
tcgattcgtttcgaggattgcacaaacgacaagactcgactcaagtacatgacggacggt
atgcttttgcgcgaatttctaggcgagcccgatctctcttcgtatgcggtgatgatggtg
gacgaagcgcacgagcgcaccctgcacacggacgtgctcttcggtctcgtcaaggacatt
gctcgcttccgtccagagatcaaacttttgatatcctccgccacgctcgacgcagaaaag
ttcagcgagtattttgattttgcgccaatctttaggattccaggtcgtaggttcccggtc
gacatcttgtacactcaacagcccgaggctgattacgtcgacgcgtccgtggtgaccatc
ttacaaattcacctgacgcaaccagagggcgacatcttggtattttgcaccggtcaggag
gagattgaaaacatcgaagagcttctgaagacgagaatccatgagatggagaagaaaccg
ccagaactcatcatcgccccgatatattcttcacttccgagcgatttacaggcgaagatt
tttgaggatccacccaaaggcgcgcgcaaggttgtcttggcgacgaacatcgccgagacg
tcgctcacgattgatggcatcaagtacgtcatcgatcctgggttttgcaagcagaagagc
tataatccgcgcaccggtatggaatctctcgtcgtcacaccgacgtcgcaggcgagcgcg
ttgcagcgcgccggtcgcgccggtcgtacctcggcgggtaaatgtttccgtctgtacacg
gcgtggagcttccaaaacgagctcgacccgaacacggtgccggagattcaacggacaaac
cttgggaacgtcgtactcatgctcaaatcgctcgggatcaatgacctgatgaactttgat
ttcatggaccccccgcccgcggagacgctcctgcgagcgctcgaacagttgtacgctctc
ggcgcgctgaatgaccgcggtgagctcacaaagctcggacgtaagatggccgagttcccc
ctcgacccaatgctctccaagacgctctgcgcgagcgacaagtacaaggtgagcgatgaa
gtcatgacgatatgctgtatgctgtcttgcggcaacgccgtgttctatcgcccgaaagac
aaactacagctcgccgatcacgcgcacaaagcgtttcacatcggcaatcccggtgatcac
atcgcactcttaaacgtgtacaactcttggcgcgacgccgatttttccgtgacttggtgt
tacgaaaatttcgtgcagcagcgaacgatgaagacggcgcgggacatccgagagcaactc
gaaaagcttctcgagcgcgtcgaaatcgagccctcgtccaatccaaacgacatcgacggc
atcaagaagtgcatcacgagtggcttcttctatcacacggccaagctgcaaaagaacggg
agctatcgcacggtgaaaaatccgcaaacggtggcgatccacccctcgagcggactcgcg
aaagagcttcctcgatgggtcgtgtactttgagctcgtgtatacgtccaaggagtacatg
agacaggtgatcgagatcaaacccgagtggctcgtcgaaatcgcgccgcactactacaag
aggaaggagatcgagggcgagacgatcaagatgggtaaggcgggcacgggcaagaagtca
gacgtcgtcttggcgtga
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