KEGG   Ostreococcus tauri: OT_ostta14g01270
Entry
OT_ostta14g01270  CDS       T01358                                 
Name
(RefSeq) Helicase, C-terminal
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
ota  Ostreococcus tauri
Pathway
ota03013  Nucleocytoplasmic transport
ota03015  mRNA surveillance pathway
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta14g01270
  09122 Translation
   03013 Nucleocytoplasmic transport
    OT_ostta14g01270
   03015 mRNA surveillance pathway
    OT_ostta14g01270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta14g01270
   03041 Spliceosome [BR:ota03041]
    OT_ostta14g01270
Enzymes [BR:ota01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     OT_ostta14g01270
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     OT_ostta14g01270
Spliceosome [BR:ota03041]
 Complex C
  Other components
   EJC/TREX
    OT_ostta14g01270
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    OT_ostta14g01270
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 DUF4844
Other DBs
NCBI-GeneID: 9837857
NCBI-ProteinID: XP_022841321
OrcAE: OT_ostta14g01270
UniProt: A0A096PBN5
LinkDB
Position
14:<218122..>219582
AA seq 486 aa
MDAARAGRRETFPPIDARDRVSRATTGASRVPHTRARDRERSPARAMPPKKRATAEAAVE
NDEEEELLDYDDVANAAGTNAPGDAVDDTADGTTAKKGYVGIHSTGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVITVLQQLEPTHGEVGAVILC
NTRELAYQISHEFERFSTFLGDVTTAVVFGGIPINQQREQLKLNPPNIVVGTPGRLKALA
NDGTLNLKKCAHFVLDECDKMLEELDMRSDVQEIFKATPHDKQVMMFTATLSKELRALCK
KFMNDPMEIFVDDETKLTLHGLVQHYVKLEEAEKNRKLNDLLDSLMFNQVVIFVSSVSRC
KALDRLLRECNFPSIGIHGDMKQEERLACYKSFKDGDKRILVATDLVARGIDIERVNIVI
NYDMPSSADTYLHRVGRAGRFGTKGLAVTFVASSEDTDVLASVHERFEVKIEELPDEIDQ
STYMPS
NT seq 1461 nt   +upstreamnt  +downstreamnt
atggacgccgcgcgcgcggggcgtcgtgagacttttccacccatcgacgcccgcgatcgc
gtctcgcgggccacgaccggcgcgtctcgcgtcccgcacacgcgcgcgcgcgaccgcgag
cgttcgcccgcgcgtgcgatgccgccgaagaagcgcgcgacggcggaggcggcggtggag
aacgatgaggaggaagaactgctggattacgacgacgtcgcgaacgccgcggggacgaac
gcgccgggcgacgccgtggacgacaccgcggacggaacgacggcgaagaaggggtacgtc
gggattcactccacgggattccgtgatttcttgttgaaacccgagttgctgcgagcgatc
gtcgattgcgggttcgagcacccgagcgaggttcaacacgagtgcattccgcaggcgatc
ttggggatggacgtgctgtgtcaggcgaagagtgggatgggtaagacggcggtgttcgtc
atcaccgtcctgcaacaactcgaaccgacgcacggagaggtcggggcggtgattttgtgt
aacacgcgagagttggcgtatcaaatttcgcacgaattcgagcgattctcgacgtttctc
ggggacgtgacgacggcggtcgtgttcggagggattcccatcaatcaacagagggaacaa
ttgaagttgaacccgccgaacatcgtcgtcgggacgccggggaggttgaaggcgctcgcg
aacgacgggacgctcaacctgaagaagtgcgcgcacttcgtcctggacgagtgcgacaag
atgttggaagagctcgacatgcgctcggacgtgcaggaaattttcaaggcaacaccgcac
gacaaacaagtgatgatgttcaccgcgacgctttccaaggagctccgcgcgttgtgcaag
aagtttatgaatgatcccatggagatcttcgtcgacgacgagaccaagctcacgcttcac
ggtttggtgcagcactacgtcaagctcgaggaggcggaaaagaaccgcaagttgaacgat
ctgttggactccctcatgttcaaccaggtcgtcatcttcgtctcgagcgtatcgcgttgc
aaagccttggacagactcctgcgagagtgcaactttccgtcaatcggcattcacggcgac
atgaagcaagaggagcgtttggcgtgctacaagtccttcaaggatggcgacaagcgtatc
ttagtcgcaactgatctcgtcgctcgcgggatcgacatcgagcgcgtgaatatcgtgatc
aactacgatatgccctccagcgcggacacgtacttgcaccgcgtcggtcgcgccggccgc
ttcggtacgaagggcctcgccgtcaccttcgtcgcctcctccgaggacaccgatgtcctg
gcttctgtgcacgagcgctttgaggtcaagatcgaagagcttccggacgagatagaccaa
tccacgtacatgccgagctag

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