Ostreococcus tauri: OT_ostta15g00790
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Entry
OT_ostta15g00790 CDS
T01358
Name
(RefSeq) Pre-mRNA-processing protein PRP40
KO
K12821
pre-mRNA-processing factor 40
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta15g00790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta15g00790
Spliceosome [BR:
ota03041
]
Complex A
U1 snRNP components
U1 related factors
OT_ostta15g00790
Complex B
OT_ostta15g00790
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
RB_A
Motif
Other DBs
NCBI-GeneID:
9837985
NCBI-ProteinID:
XP_022841118
OrcAE:
OT_ostta15g00790
UniProt:
A0A096P9U5
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Position
15:<143023..>144570
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AA seq
515 aa
AA seq
DB search
MSKNPSHPSSTTRPTSTSWETHRAPDGRTYYYDPVTKRSTYEKPEEMMSVMERAEASTRW
RRFETPAESDGKPGREYWAHQGTGETTWEVPRAIVEVREAVRRAEQKKASGGGERGAKSE
PGRTDEESLTIVRPTYASVEEAKEAFKKMLADHGVRGSTKWEEVVNRCKADARFGALGST
GEKKQCLNEYQQARAKMEREARRIAEKKAREALRTLLEERRERLGLTSSSRLTRDGPIEE
ALRDDPRWRAITDARERADIFEDFTRDLRIREQRERERSKTNRAQSFKECLLEAGATAES
LWRKIRGVVQHDERYTSCEPVERLEVFEKLLRELQVKEEAKVEAERAATARSERKRREAF
VELLNEAKSDGVIEPRMPWKSFVPRIENDQRYTNACENIDGSRPRELYEDVIDEIEDEID
QKLDDFEDLLREGYKARELFGNTTWEKAEKLYRHDKAWKEAPKEEAKKLFVKFIAKVFRR
EQEKERLRREERDGRNERDERSLKKSRRDRSRSRY
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaatccatcgcatccgtcgtcgacgacgcgtccgacgtcgacgtcgtgggag
acgcaccgcgcgccggacggacggacgtattactacgaccccgtgacgaagcgatcgacg
tacgagaagccggaggagatgatgagcgtgatggagcgcgcggaggcgtcgacgcggtgg
cggcggttcgaaacgcccgcggagagcgatggaaagccgggaagggagtactgggcgcac
caagggacgggagagaccacgtgggaggttccgagggcgatcgtggaggtgagagaggcg
gtgcgaagggcggaacagaagaaggcgagcggaggcggcgagcgcggggcgaagagcgaa
ccgggacggacggacgaggaatcgttgacgatcgtgcgaccgacgtacgcgtcggtggag
gaggcgaaggaggctttcaagaagatgctcgccgatcacggcgttcgtgggtcgacgaag
tgggaggaggtggtgaatcgctgcaaggcggatgcgcgtttcggtgcgctcggatcgacg
ggcgagaagaagcagtgtctgaacgagtatcagcaggcgcgagcgaagatggagcgcgag
gcgcgcagaatagcggagaagaaggcgcgagaggcgcttcgaacgcttttggaggagcgg
agggagcgtttggggttgacatcgagctcgaggctgacgagagacgggccgattgaggag
gcgcttcgggacgatccgaggtggcgagcgatcacagacgcacgcgagcgggcggacata
ttcgaggattttacccgcgatttacgtattcgagagcagcgtgagcgcgagcggagcaag
acgaaccgcgcgcagtcgttcaaggagtgcttgttggaggccggcgcgacggcggagtcg
ctgtggcgaaaaattcgaggcgtcgtccagcacgacgagcgatacacatcgtgcgagccg
gtcgaacgcctggaggtgttcgagaagctacttcgtgagttacaagtcaaagaggaggca
aaggtcgaggctgagcgcgcggccacggcgaggtcggagcgcaagcgaagggaggctttc
gtcgagctcctgaatgaggcgaaatccgacggagtcatcgagcccaggatgccttggaaa
tccttcgtccctcgcatcgaaaacgaccagaggtacacgaacgcgtgcgaaaacatcgac
ggcagtcgtccacgggagctctacgaggatgtcatcgatgagatcgaggacgagatcgat
caaaagctcgacgatttcgaggacttgctccgggaagggtacaaggcgcgcgagctcttt
ggcaacaccacgtgggagaaggctgaaaaactgtacaggcacgacaaagcgtggaaagag
gcgcccaaggaagaggcgaagaagctcttcgtgaagttcatcgccaaggtgtttcgtcgt
gaacaagagaaggagcggctacgcagggaggagcgcgacggccgcaacgagcgagacgag
aggtctttgaaaaaatcgcgccgcgatcgaagtcgtagtaggtattaa
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