KEGG   Ostreococcus tauri: OT_ostta16g00390
Entry
OT_ostta16g00390  CDS       T01358                                 
Name
(RefSeq) Ribonucleoprotein LSM domain,eukaryotic/archaea-type
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ota  Ostreococcus tauri
Pathway
ota03018  RNA degradation
ota03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ota00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    OT_ostta16g00390
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OT_ostta16g00390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ota03019]
    OT_ostta16g00390
   03041 Spliceosome [BR:ota03041]
    OT_ostta16g00390
Messenger RNA biogenesis [BR:ota03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     OT_ostta16g00390
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     OT_ostta16g00390
Spliceosome [BR:ota03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    OT_ostta16g00390
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 9831160
NCBI-ProteinID: XP_022840287
OrcAE: OT_ostta16g00390
UniProt: A0A096P7W0
LinkDB
Position
16:<53902..>54462
AA seq 82 aa
MAPGSGTSGVSPSDFLRAIEGKTVLVRLNSGADYRGVLACLDGYMNIAMEQTEEYVNGQL
KNKYGDAFIRGNNVLYISAVNK
NT seq 249 nt   +upstreamnt  +downstreamnt
atggcgcccggatccgggacctcgggcgtctccccgagtgatttcttgcgagcgatcgag
gggaaaacggtgctcgtgcgattgaactcgggggcggactacaggggggtgctggcgtgc
ttggatgggtacatgaacatagcgatggaacagacggaggagtacgtgaacggacagttg
aagaataaatacggtgacgcgttcattcgggggaacaacgtgctctacatcagcgccgtg
aataagtag

DBGET integrated database retrieval system