Ostreococcus tauri: OT_ostta16g02010
Help
Entry
OT_ostta16g02010 CDS
T01358
Name
(RefSeq) Tetratricopeptide repeat
KO
K12600
superkiller protein 3
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta16g02010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta16g02010
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
OT_ostta16g02010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_11
TPR_CcmH_CycH
TPR_1
TPR_16
TPR_19
TPR_2
TPR_14
TPR_17
TPR_9
DUF7017
TPR_12
Motif
Other DBs
NCBI-GeneID:
34946491
NCBI-ProteinID:
XP_022840362
OrcAE:
OT_ostta16g02010
UniProt:
A0A096P8T4
LinkDB
All DBs
Position
16:341103..345146
Genome browser
AA seq
1347 aa
AA seq
DB search
MSSEKARLIGKLKSANDALKEGSLDAALERAREATEMDAASYEAWVVAGKVFCARGASDD
AVKAYERAIGIRGDHPAAYQGLNETHAKTGDVEGQLRALSALVETHRASGKTEKYVGFLT
QACDLAWEQKDWARAIGFYRELGRFRDASVEETKRIEAVRRACEAALAARDARAAEAGEA
AVQMLRSTTIASKSEEAIVRKLGMRASHAVDDEALTMTLSEWLVEDAANVAFDSRTHAAE
FDRLDARLAASLSAQVNCEFDPKKSARELLKEASSLVDRWGDVAFDIVSDSVLDVVAALE
LGLDCEEEGWDDDDGNDANDEAVLIELLARVEKSRPNALARGWLALRSVRRSGAFAHSCR
PGQPPRGEKGLLSTDLRDDMIVTLNGDDESKPSHASAALGWLALSESMLIGGEHEEVHAL
HCAATAMKILRVDVTTDALPKTSRRVLMVHAEAMLRSGMFKPARAAFIALEGPRAMRGLA
MCAYNAHPPEYDEALRLLSDAAEAYPNVRRVQVELGWLAMLAGSTDSRDRALDILERACG
ATADVPLSPTTPADASARLGVARWRSSLCTSKGPGSAHEALLIGAAGESPYRAAAFAHLG
LSCAAAGDSARARKCHARALAIDPSDPTSGPVAFADALGAGDERMAVAVCRAALKVDSRC
SWAANRLAPLCARLGDHQGAVDALQVVLRVSSQNGNAWEALGAAYNALGRHSASLKAFAR
AMELGDAHLYAAAQSGHIHLTLGSSVDAIQCYEKALSDGVDRVAALFGSASAHAYFAKGA
LRWGAPGQAASSLRAAKSAASRVIELMGDEATATVWKLVGDVHYLAALVNDPAHGRDYDS
MLTERAEAARAATRAHERALELHHDRPARWRDVVASLVLESDICAALGDAQCSNVLRTKA
LERAMGYVRLDSGDPRAWLALANLDDPSVSDEAVRLERKVTALDRATALDPTFAEAWCAL
GRLRLSLGDVSAAATALDRARIADPSSGEAWTVTAAVHCARNNIDEGRGAFRMASQLGAG
FEADLGYALASCASSPSHARDAYAAARRASEAAPADASAALALALCSEARGLRSGAVEAC
EQALDLGSRASASMALIEDASVVRRVAERCLQRVRDRDDIENVDTDAPSQSLEEAIRRAL
IATRAQPECSECRRDFVLLASASSNHALVAAAARACPEAQPRGDHRVQSSIERAAAACAL
NATPMVGADEARALAIRRACRATMLDPGHPDSIDLIKLCAGASTEETNARETHRVKILND
AVERFLAGDRTAETVVRDMRKDESVSPNARACAQLILGAFLRERFRADGDKNALKEARKV
LRVNPSKTGAFEDIVTAFAEALEVSSA
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcgaaaaggcgcggttgattggaaaactgaaatcggcgaacgatgcgctgaag
gaaggatcgctcgatgcggcgctggagcgagcgagggaggcgacggagatggacgccgcg
agttacgaggcgtgggtggtcgccgggaaggttttctgcgcgagaggcgcgagcgatgac
gcggtgaaggcgtacgaacgcgcgatcgggatcagaggggatcacccggcggcgtatcaa
gggttgaatgagacgcacgcgaagacgggtgacgtcgaagggcagttgagggctctgagc
gcgctcgtggagacgcatcgagcgagtggaaagacggagaaatacgtcgggtttttgacg
caggcgtgcgatcttgcgtgggagcaaaaagattgggcgcgcgcgattgggttttatcgc
gagctcggtcgttttcgcgatgcgagcgtggaggagacgaaacgcatcgaggcagtgcgt
cgcgcgtgtgaagctgccttggcggctcgggacgcgcgtgcggcggaagctggagaagct
gcggtacaaatgctgcgctcgacgacgatcgcgtccaagagcgaagaagcaatcgtgcgt
aagcttggtatgcgtgcatcgcacgccgttgacgacgaggcattgacgatgacactttct
gagtggttggtcgaagacgcagcgaacgttgcgtttgactccaggacacacgccgccgaa
ttcgatcgtctcgacgctcgcctcgccgcttcgctctcggcacaggtcaactgcgagttc
gacccaaagaagagcgcgcgtgagctcttaaaggaggcttcatccctcgtagatcgatgg
ggcgacgttgcatttgacatcgttagtgactccgtgctggatgtcgtcgccgcgcttgag
ctcgggttggattgcgaggaagagggatgggacgacgacgacggcaacgatgcaaacgat
gaagcggttctgatcgaactgctcgcacgcgtcgagaaatcgcgcccgaacgcgttggcg
cgaggttggctcgccttgcgctccgtgcgccgaagtggcgcgttcgcgcactcgtgtcga
cctggtcagcctcctcgaggcgagaaaggattgttgtcaaccgatttacgagatgacatg
atcgtcactctcaacggagacgacgaatcgaaaccgagtcacgcgtccgccgccctcggg
tggcttgcgctttccgaatccatgctcatcggcggcgaacacgaagaggtccatgcgctt
cactgcgccgcaacggcgatgaagattttgagagtcgacgtgactacggacgcgctaccg
aagacatcgcgtcgagtgttaatggtgcatgcggaggcgatgctacgatctgggatgttc
aagcccgcgcgagcggcgttcatcgctttggagggaccgcgtgctatgcgcggattagct
atgtgcgcatacaacgcgcaccctccagagtacgacgaagctttgcgcctgttaagcgac
gccgcggaggcgtacccgaatgttcgtcgcgtgcaagtcgagctcggatggctcgccatg
ctcgccgggtcgacagattcgcgtgatagagcgctcgacattttggaacgtgcgtgtggc
gcgactgcagacgtaccactcagtccgacgacgccggccgatgcgagcgcgcgactcggc
gtcgctcgatggcgctcgagcttatgcacatcgaaaggtccagggagcgcgcacgaggcg
cttctgatcggcgccgcgggtgaatctccgtatcgtgcggcggcgtttgcacatttggga
ttgtcttgcgccgccgccggagactcagcgcgcgcgcggaagtgtcacgcccgagcgctc
gcgatcgatccctcggatccgacgtctggtccagtggcgttcgctgacgctctcggcgcg
ggagatgagagaatggccgtggcggtgtgtcgcgcggctctaaaagttgattctcgatgc
tcttgggcggcaaacaggctcgctccgctgtgtgcccggctcggcgatcaccagggcgcg
gtcgacgcactgcaagtcgtcctccgcgtctcgtcgcaaaatggtaacgcgtgggaggcg
ctcggtgctgcgtacaacgccctcggtcgacattccgcatcgctcaaggctttcgcgcga
gcgatggagctcggcgacgcacatttgtacgcggcggctcaatcggggcacattcacctc
actctcggttcgtccgtcgacgccatccagtgttacgaaaaagcgctcagtgatggagtc
gatcgagttgccgcgttgttcggatcggcgagcgcgcacgcatatttcgccaagggcgcc
ttgcgctggggcgcgcccggtcaagcggcgtcgtctcttcgagcagcgaagagcgccgct
tcacgcgtaatcgagctcatgggcgacgaagcgaccgcaacggtttggaaactcgtcgga
gatgtccattatctcgccgcactcgtcaacgatcccgcacacgggagagattacgattcc
atgctcactgagcgcgccgaagcggctcgcgcagcgactcgggcgcatgagcgcgcgtta
gaactccatcacgatcgtcccgcgcgatggcgagacgtcgtcgcttctttggttcttgaa
tcggacatttgcgctgcgttgggcgatgcgcagtgctcgaacgtgctcagaacaaaagct
ctggagcgggcgatgggatacgttcgacttgattcgggagatcctcgcgcgtggcttgca
ctggcaaacttagacgatccgtctgtttcagacgaggccgtgcgattggagcggaaagtc
accgcactagatcgcgcgacggcgctcgacccgacgttcgccgaagcttggtgcgcgctg
ggaagactgcgactgtccttaggcgatgtctctgcggcggcgacggcgctcgatcgcgca
cgcatcgccgatcccagttcgggcgaagcttggaccgtcaccgccgcggtgcactgcgcg
agaaataatatcgacgaaggtagaggggcgttccgaatggcgtcgcagctcggcgctgga
ttcgaggcggatttaggatatgcgctcgcgtcgtgtgcgtcaagtccgtcgcacgctcgt
gacgcatacgcagccgcgcgtcgcgcgagtgaggccgcaccggcggatgcgagcgcggct
ctagcgttggcattatgctcggaagctcgcggtctacgttcgggcgccgtcgaggcatgc
gagcaagcgttggatcttggatcgcgcgcctcagcgtccatggcgctcattgaagacgca
agtgtcgttcgacgggtcgccgaacgatgtctccagcgcgtgcgcgatcgagatgacatc
gagaatgtcgacaccgacgccccgtcgcagtcgctcgaagaggctattcgtcgagcgtta
atcgcgacacgcgctcaaccggaatgctccgaatgcagaagagatttcgttctcctcgcg
tcggcttcaagcaatcacgccctcgtcgccgcggccgctcgagcgtgtccagaggcccag
cctcgaggtgatcatagagtgcagtcaagcatcgagcgcgccgcggccgcatgtgcactc
aacgccacgcccatggttggcgccgatgaagcgcgcgctctagcgattcgccgagcatgc
agagctacgatgctcgatccaggacatccggattccatcgatctcatcaaactctgcgct
ggtgcgtcgacggaagaaacaaacgctcgagaaacgcaccgggtaaagatcttgaacgac
gccgttgagcgattcctcgctggtgatcgtactgctgaaaccgtcgtgagagacatgcgc
aaggatgaatccgtgtcgccgaacgcccgtgcgtgcgcgcagctcatcctcggcgccttc
ctgcgagaacggttccgtgccgatggtgataaaaacgcgttaaaagaggctcgtaaggtt
ttacgcgtcaatccgagcaaaacgggcgcgttcgaggacatcgtcaccgcgttcgccgag
gcgctggaagtctcgtcggcgtga
DBGET
integrated database retrieval system
