Ostreococcus tauri: OT_ostta17g00850
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Entry
OT_ostta17g00850 CDS
T01358
Name
(RefSeq) BSD
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ota
Ostreococcus tauri
Pathway
ota03022
Basal transcription factors
ota03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
OT_ostta17g00850
09124 Replication and repair
03420 Nucleotide excision repair
OT_ostta17g00850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ota03021
]
OT_ostta17g00850
03400 DNA repair and recombination proteins [BR:
ota03400
]
OT_ostta17g00850
Transcription machinery [BR:
ota03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
OT_ostta17g00850
DNA repair and recombination proteins [BR:
ota03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
OT_ostta17g00850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
9831273
NCBI-ProteinID:
XP_003083853
OrcAE:
OT_ostta17g00850
UniProt:
Q00TJ6
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Position
17:complement(143609..145360)
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AA seq
583 aa
AA seq
DB search
MASTSEDVLHRCACASTVAGAKAQGEAIMRATTLSWQPLDDDNFTGAKVVRLLAVTAHQR
NKPGSATASLRLVPENDAKRALVLAFSSESDRDALSDAIKMQIKKLEEEARGAPTAAELA
ARKELLKKNVEIAQLYEETVKTGVISDEDFWEARRNLFTDVVARRATGQKIGIENTLDGD
LKGARDGMSDTVTCNLTNEKMHRIFAERPSVRQAFLDNVPKKMTEREFWTRFLRSEYFKQ
MRAGAPPQGEEEAADLALFSRKPLDADTRKAQIKTITPTLNLKAEEDEALGDGYGLLRDG
SRDTRRPKEAGPLPEVFAELNHHAAVVLRGQPQANIVDARSAAIAARDHEQSAEGAKIGV
EEPNYLIDDLVAPPPPASMKELNISDSHQYFSSIVNDMAAKRTSKSSKAVIEPFKAAVTS
ALNALTHPEKRHKCAMEPVVASEVLTEVTKSLAKVEDLNAQFASHQSFSSAEDSEPIPSS
VDVQLSRSALTGGELLRQFWMSTPMVTSVRWEKATKVSKSIETLYDTLEKLKGSLAPVHR
HITSQRLRPLLSAFDSALTFYDDEKTRRPQAFADFEKAQAQVA
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgacgtcggaggacgtcttgcaccggtgcgcgtgcgcgagcacggtggccggg
gcaaaggcgcagggagaggcgataatgcgagcgacgacgctctcctggcagccgttagac
gacgataacttcaccggagcgaaagttgtgaggttactcgcggtgacggcgcaccagagg
aacaagccgggaagcgccacggcgagcctgaggctcgtgccggaaaacgacgccaagcgc
gcgctcgtgctcgcgttctcaagcgagagcgatagggatgctttgagcgatgcgatcaag
atgcagataaagaagttagaggaagaggcaaggggggcgcccaccgcggccgagctcgcg
gcgcggaaggagttattaaagaagaacgtggagatcgcgcagctgtacgaggagacggtg
aagacgggtgtgatcagcgatgaggatttttgggaggcgcggagaaacttgttcaccgac
gtagtcgctcgaagggcaaccggtcaaaagattggcatcgaaaacaccctggatggcgat
ctcaagggagcgcgagatgggatgtcagatacagtgacgtgcaacttgacgaacgagaaa
atgcacagaatctttgcagaaaggccgtcggttcgtcaggcattcttggacaacgtcccg
aaaaagatgaccgagcgtgaattctggacgcgtttcttgcgttcggagtacttcaagcag
atgcgtgctggagcaccgccgcagggggaagaagaggctgctgacttggctctgttctcg
cgaaaacctctcgatgcggacacgcgcaaggcgcaaataaaaacgattacgcccacactg
aacttgaaagcggaagaagacgaggccttaggtgacggatacgggttgctgcgggacggt
tcgcgagacacgcgacgaccaaaagaggcaggccctttgccagaagtgttcgcagaactc
aaccatcacgcagctgtagtgctccgagggcaaccgcaggcgaacatagtcgatgctaga
tccgctgcaattgctgctagagatcacgaacaaagcgccgagggtgcaaaaataggcgtc
gaagaaccgaattatttgatcgacgatcttgttgctccgccaccgccagcctccatgaag
gagctcaacattagtgattctcatcagtacttttcatcgatagtgaatgatatggcggcg
aaaaggacttcgaaatcttccaaagcggtcatcgaaccgttcaaagcggccgttacctcg
gctttaaacgcactgactcatcctgaaaagaggcacaaatgcgccatggaaccggtggtg
gcgtcagaggtgttgacagaggtcaccaagtcactcgcgaaagtcgaagacttgaacgca
caatttgcatcgcatcaaagctttagctctgctgaagattccgagccgattccttcgagt
gtcgatgtgcagttgtcccgaagtgcgttaactggcggagagctgttgcgacagttctgg
atgtccactcctatggtgacatcggtgcgatgggaaaaggcgacaaaagtgagcaaatcg
atcgaaacgctgtacgacacgcttgaaaagctcaaaggctcgctcgctcccgtccaccgt
cacatcacttctcagcgtctgcgaccacttctcagcgctttcgatagtgcgttgacgttt
tacgatgacgaaaagacccgaaggccgcaggcgttcgcagactttgagaaggcacaggct
caagtagcctaa
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