Ostreococcus tauri: OT_ostta17g02160
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Entry
OT_ostta17g02160 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ota
Ostreococcus tauri
Pathway
ota03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
OT_ostta17g02160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ota03041
]
OT_ostta17g02160
03009 Ribosome biogenesis [BR:
ota03009
]
OT_ostta17g02160
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OT_ostta17g02160
Spliceosome [BR:
ota03041
]
Complex A
U1 snRNP components
U1 related factors
OT_ostta17g02160
Complex B
OT_ostta17g02160
Ribosome biogenesis [BR:
ota03009
]
Eukaryotic type
Pre-60S particles
Helicases
OT_ostta17g02160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
9838134
NCBI-ProteinID:
XP_022840496
OrcAE:
OT_ostta17g02160
UniProt:
A0A096P8P0
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All DBs
Position
17:365990..367576
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AA seq
528 aa
AA seq
DB search
MPSDAAKKRARADETPEARARRKAAKRAKKDAEERRRDVERDASPSIEAPPTPTLKRVAS
KEDFRKEHQISIKNACERTRDLEPYVTFDDAKFPAALRKALKAQGYDAPTPIQAEAWPIL
LKGKDVVAIAKTGSGKTCGFLLPALAKIVAEGTQKAPEMQLVDGRWRPGAVTPSVIVLAP
TRELAIQIHDECAKFCPAAGCRSAVLYGGAAKGDQLRALRSGADVVVATPGRLNDFLEPP
PGFTAPVSAVKAAYVVLDEADRMLDMGFEPQIKKIFKLCPSARQTVMFTATWPKGVQKIA
DAFTTKPIHIQIGSGGDKLTANKSITQTVEVVEEEEKFDRCVAILKKELGKNETCIMFAG
TKRRCDFLDRRLKQVGFSSAGSIHGDKDQYEREMVLDNFRRGRGNILVATDVAARGLDIP
GVAAVIVYDFPLQVEDYVHRIGRTGRAGKDGKAFTFFTKDNRGAANELIEILQGAGQTVP
LALQAMQRKGGGGGRGYSGGRGGGRGRGGGRGGRGGGRGRGGGRHNKW
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgatgcggcgaagaaacgcgcgcgcgcggacgagaccccggaggcgcgcgcg
cgacgaaaggcggcgaagcgagcgaagaaagatgcggaggagcggcggcgagacgtcgag
cgcgacgcgtcgccgtcgatcgaggcgccgcccacgcccacgctcaagcgcgtggcgtcc
aaggaagactttcgtaaggagcatcagatatcgatcaagaacgcgtgcgagcggacgagg
gatttggagccgtacgtgacgtttgacgacgcaaagtttccggcggcgctgcgaaaggcg
ttaaaggcgcaaggatacgacgcgccgacgccgattcaggccgaggcgtggccgattttg
ttgaaagggaaagatgtggtggcgatcgcgaagacgggttcggggaagacgtgcgggttc
ttactcccggcgttggcgaaaatcgtcgccgaggggacgcaaaaggcgccggagatgcaa
ctcgtcgacgggcgatggagaccgggagcggtgacgccgagcgtgatcgttctcgcgccg
acgcgagagttggcgattcagattcacgacgagtgcgccaagttttgtccggcggcggga
tgtcgttcggcggtgctctacggaggcgccgccaagggcgaccagcttcgagcgctgcgc
tctggcgcggatgtcgtcgtcgccaccccggggcgcttgaacgatttcttagagccccct
cccggattcaccgcccccgtgagcgccgtgaaggcggcgtacgtggtattggacgaagct
gatcgcatgttagacatgggtttcgagccgcagattaagaagatttttaagctgtgtccg
tcggcgcgacagacggtgatgttcaccgcgacgtggccgaagggcgtgcaaaagatcgcc
gatgcgttcacgaccaagccgattcacatccaaatcggttctggtggggacaagctcacg
gcgaacaagtccatcacgcaaaccgtggaggtggtggaggaggaggaaaagtttgatcga
tgcgtcgccatcctgaagaaggagctcggtaagaacgagacgtgcatcatgttcgccggc
acgaaacgtcgatgcgatttcttagatcgccgactgaaacaagtcgggttctcatccgcg
gggtcgattcacggcgacaaggatcagtacgagcgcgagatggtgctcgacaatttccga
cgcggtcgcgggaacattctcgtcgcaaccgacgtcgccgctcgcggcttggacatcccg
ggcgtcgccgcggtcatcgtgtacgattttccacttcaggtcgaggactacgtgcacaga
atcggccgaaccggtcgcgcgggtaaggatggaaaggctttcacgtttttcaccaaggac
aaccgcggcgctgcgaatgagctcatcgaaatcctccagggtgcgggtcaaaccgttcct
ctggcgctccaggcgatgcaacgcaagggtggcggcggcggccgcggctactccggcggc
cgaggcggcggcagaggccgaggcggcggcagaggcggcagaggcggcggcagaggcaga
ggcggcggcagacataacaagtggtga
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integrated database retrieval system
