Ostreococcus tauri: OT_ostta18g01620
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Entry
OT_ostta18g01620 CDS
T01358
Name
(RefSeq) Helicase, C-terminal
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ota
Ostreococcus tauri
Pathway
ota03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OT_ostta18g01620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ota03019
]
OT_ostta18g01620
03012 Translation factors [BR:
ota03012
]
OT_ostta18g01620
Enzymes [BR:
ota01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OT_ostta18g01620
Messenger RNA biogenesis [BR:
ota03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
OT_ostta18g01620
Translation factors [BR:
ota03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
OT_ostta18g01620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
AAA_19
AAA_22
HA2_N
MoCF_biosynth
ATPase
nSTAND3
MecA
CAS_C
Motif
Other DBs
NCBI-GeneID:
9838348
NCBI-ProteinID:
XP_022840573
OrcAE:
OT_ostta18g01620
LinkDB
All DBs
Position
18:complement(284945..289099)
Genome browser
AA seq
1384 aa
AA seq
DB search
GARGGGGDRTGGRGGRGIVGGRGGRGGRGGRGGGRGGGKTSAGRGQKGQTKGKAKTQKVK
TEIPKVGELGREIMTRHRARDLANALGVDGRNVRNVLHTASLKMMLKQRISTTVSGPLHD
QVFVTVVRTTVPSGVFVAPPAESNGLDGGAVEMVNTGAAFGKRESETLALIDLCEQLTKN
GIRPQDPPDVRKMMAEREKETLKARKNRAQLVLEMVGATKPSLQTSQSGKFFVTDVSLLV
DGGKKLVGSGKAVSKAASEAEAIINVAAGPLAEALGQERVDELHRVIDASPGNHVSVMSV
PPLPDRGIDILVQAMGSPEEHDSRMDDVLTTQAAFEAKFAARQESKWRQSASKESGPSKA
EQILKAARESRASDRVASKNEEYAAEEAERLRRAIEDETSPQADMKRIRDALPIKAIREE
LVEALRTQQVVVVSGGTGSGKSTQCPQYILEDAIATGNGPTTRIVVTQPRRIAAISVAER
VAAERDEPVGSSVGFAVRLHGTSPRDAASIEFVTTGVLLRRLMRDQNLDGISHVMIDEVH
ERDINTDFLLVLLRELITTRPDLRVVLMSATLDAESFSEYFTGSGTHDLEQGVPLMSVPT
KPRHPVEIFHLEDMLDGGGELEVEDESLLNEDNESVSSREIPNHLKKLAKDLLAAQDRSL
RRELEEAEAEEIAAQQLERLSSAEDEQVEVEVSEDEEEDDEDQEEEEDDAVDSELEDLEV
ELDGANSVRGMSPRRMRASSRVRKLRRALAMRKARTGESSMRKGAGDTRVRQNESKEVSE
LTMQLLVEVAKHIASIETDAGRKGSILCFLPGWDEIKTAMEILQDTTDAELYGKMNVIPL
HSTIPQEEQQKVFVPAPDGVVKVIFATNIAESSVTINDVLAVVDSGLVREMSWNPESGMS
CMETVTTSRASATQRTGRAGRVAPGSCYRIYSHGTLHAMEERPTPEIQRTALEATCLQTC
SMTNTGIERFLSKAMDPPSLESVEYAMDRLLKLGAIKSNETTGGEDLTPMGRLLSILPLD
PGTGRMLIMGAVLRCLDPVLTAAACFSSRDPFYVPPGMRDEARQIRQSFCATSDLLATVR
AYGTFQDILYEQGWDSARRWASDNFVSINALNTITSVRSQLLHELNRIGLVQDTDLDSRS
HNKKTLRFDASVNLNASNESLFTAVWAAGLPGNIASRRPFGNFGTLRTRTEEHAGLHPSS
VAFHRKPPRDRTPLPVWFLYKEMMLSSQVFLRDVTAMRPEQLMLLGGHALQKRDFTGADG
DESPESEGALLDASGNPIAEDDDPRRVGPRLMLDDWIVIHSSCADTADLLTDVRREIDAA
LALKVMNPRKPLPDASEDIIHAVSRLFRVIDERDERRQTFLRRRREGDFDRGDRGGGFRG
ANRR
NT seq
4155 nt
NT seq
+upstream
nt +downstream
nt
ggcgcgcgtggagggggtggtgatcgcacgggagggcggggggggcgagggatcgtcggt
gggcgcggtgggcgcggtggacgggggggacggggcggcggtcgaggcggcgggaagacg
agcgcgggacgaggacagaagggacagacaaaggggaaagcgaagacgcagaaggtgaag
acggagattccaaaggttggggagctcggtcgggagattatgacgagacatcgagcgaga
gatttggcgaacgcgctcggagtcgacggacgaaacgttcggaacgttctgcacacggcg
tcgttgaagatgatgctgaagcagcgaatatcgaccacggtgagcggaccgttgcacgat
caagtttttgtgaccgttgtacgcacgacggtgccttcgggtgtctttgtggctccgccc
gcggagtcgaacggtttagacggcggtgcggtggaaatggtgaacacgggagcggccttc
ggaaagcgagagtccgagacactggcgctgatagatttgtgcgagcagttgacgaaaaac
gggatcaggccccaggatcctccggacgtgcgaaagatgatggcggagcgcgagaaggaa
acgttgaaggcgagaaagaaccgggctcaactcgtgttggagatggtcggggcgacgaaa
ccgtcgttacaaacgtctcagagcggtaagttcttcgtcaccgatgttagtttactcgtg
gatggggggaagaagcttgttgggagcgggaaggcggtgagcaaagctgcgagtgaggcc
gaggctatcattaacgtcgccgccggaccgctggccgaggcgctgggtcaagagcgcgtg
gacgaacttcatcgcgtcatcgatgcctcaccgggaaatcacgtatcggtgatgtcggtt
ccaccgctcccggacagaggaatcgatatcctcgttcaggcgatgggatcaccggaggaa
cacgacagtcgcatggacgacgtcttgaccacgcaggcggcgtttgaggccaagtttgct
gctcgtcaagagtcaaagtggcgtcaatcggcgtcgaaagagtctggaccgtccaaagcg
gagcagattctgaaagctgctcgcgagtctcgcgcatctgatcgagtcgcatcaaagaat
gaggaatacgcggccgaagaagccgagcgtttacgccgagcgattgaggacgagaccagt
ccgcaagcggacatgaaacggattcgggacgcgcttccgatcaaagctatccgtgaggaa
ctcgttgaggctttgcgcactcagcaagtcgtcgtcgtctccggtggtacaggaagcggg
aaatcgacgcagtgtccgcagtacattctggaggacgccatcgccactgggaacgggcca
actaccagaatcgtcgtgacacagccgcgtcgaatcgccgcgatatctgtagccgagcgc
gtcgccgccgaacgcgacgaaccagtcgggagttcggttggcttcgcggttcgtctgcat
ggcacatcgcccagagacgcggcaagcatcgagtttgttactacgggtgtcctgttacgt
cgattgatgagagatcaaaatctagacggtatctcgcacgtcatgattgatgaagtccat
gagcgtgatattaacacggatttcctcttggtgctccttcgggaactgatcacgacccgc
ccggatttgcgagtggttctgatgagcgcgacgctcgacgcggagtcgtttagcgaatac
ttcaccggatctggaactcatgacttggaacagggtgttccgttgatgagcgttcccacg
aagccgcggcacccggtcgaaatattccatctagaagacatgctagacggaggaggcgag
ctcgaggtcgaggacgaaagtcttctcaacgaagataacgagtcggtgtcgagcagagag
attccaaaccacctgaagaagttagcgaaggatttactagcagcgcaggatcgttcgctg
agacgcgagctcgaagaggcagaggcagaagagattgcagcgcaacagcttgaacgctta
tcttccgcggaggacgagcaagtggaggtggaggtttccgaagatgaagaggaggatgat
gaggaccaggaggaagaggaggacgatgctgtcgactccgagctggaagatttggaggtc
gaactcgatggtgcaaatagcgtccgtgggatgtctccgcgtcgcatgcgagcatcgtct
cgagtccgaaagcttcgccgcgcgctcgccatgcgaaaggctcgcacgggtgagtcatcc
atgcgcaagggagctggagatactcgcgtcaggcagaatgagtcaaaagaggtgagcgag
cttaccatgcaactcttggttgaggtcgcgaagcacatcgcatcgatagagacagacgcc
ggacgtaagggaagcatcttgtgcttcttgcccggttgggatgagatcaagacggcaatg
gagatcctacaggacaccaccgacgcggagctgtatggtaagatgaacgtcattcctctt
cactcgacgattccgcaggaggaacagcaaaaggtcttcgttcccgccccggacggcgtc
gtcaaggtgatttttgccaccaacatcgctgagtcctcggtgactatcaacgacgtcctc
gccgtggttgatagcggactcgttcgcgaaatgtcgtggaaccctgagagcgggatgtcc
tgcatggaaacagtgacgacatcgcgcgcgagcgctacgcagcgaacaggtcgagcgggc
cgggtcgcaccggggtcgtgctatagaatctattctcatggcactctgcacgcgatggag
gagcgaccgactcctgagatccaacgtaccgcgctcgaggccacgtgcttgcaaacgtgc
tcgatgacgaacacagggattgaacgtttcctatccaaggcgatggatcctccgtcgttg
gagtcggtggagtacgcgatggacaggttactcaagctcggggccatcaagtcgaacgaa
accactggtggcgaggacctcacgccgatgggtcgactcctgtctatcctgcccctcgat
ccgggcacgggtaggatgttgatcatgggggcagttttgcgctgtctcgatcctgtgctc
accgctgcggcgtgcttcagctccagagatccattctacgtcccaccgggcatgcgcgat
gaggcgcgtcaaatcagacagtcgttctgcgccacgtctgatctgcttgccaccgttcgc
gcgtacggcactttccaagacattctgtatgaacaaggttgggacagcgcgcgtcgatgg
gccagcgataactttgtctctatcaatgccctgaacaccatcacttctgtccgctcgcag
ctcttgcatgagctcaaccgcattggtctggtgcaggacaccgatttggacagcaggtca
cacaacaagaaaacattgcgtttcgatgcctcggtgaatctcaacgcgagcaatgaatcg
ctcttcaccgcggtttgggccgcgggattgcccggaaacattgcctcgcgacgtccgttc
ggtaatttcggtaccttgcggacgcgcactgaggagcacgccggcctccacccatcgagc
gtcgcgtttcatcgcaagccgccgcgcgataggacaccactccccgtgtggtttctgtac
aaggagatgatgctcagttcccaggtgttccttcgggacgtcaccgcgatgcgtcccgag
cagctcatgctcctgggcgggcacgcgttgcagaaacgtgacttcactggcgccgacggc
gacgaatcgcccgagtccgagggcgctcttttggatgcgagcggtaatccgatcgctgag
gacgacgatcctcgccgcgtcggcccgcgtttgatgctcgatgattggatcgtcatccac
tcctcgtgcgccgacaccgcggacctcctcaccgacgtccgccgagagatcgacgccgca
ctcgcgctcaaggtgatgaacccccgaaaaccgctcccagacgcgagcgaggacatcatt
cacgccgtcagtcggctcttccgcgtcatcgacgagcgcgacgagcgtcgccaaaccttt
ctcagacgccgaagagaaggcgactttgatcgaggcgaccgcggcggcggattccgcggc
gccaatcgacgctaa
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