KEGG   Onychostruthus taczanowskii (white-rumped snowfinch): 121332445
Entry
121332445         CDS       T07590                                 
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
otc  Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc03440  Homologous recombination
otc03450  Non-homologous end-joining
otc04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:otc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    121332445 (RAD50)
   03450 Non-homologous end-joining
    121332445 (RAD50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    121332445 (RAD50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:otc03032]
    121332445 (RAD50)
   03400 DNA repair and recombination proteins [BR:otc03400]
    121332445 (RAD50)
DNA replication proteins [BR:otc03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    121332445 (RAD50)
DNA repair and recombination proteins [BR:otc03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     121332445 (RAD50)
    BRCA1-C complex
     121332445 (RAD50)
   NHEJ (non-homologous end-joining)
    MRX complex
     121332445 (RAD50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_21 SMC_N AAA_15 SbcC_Walker_B DUF2703 AAA_29 AAA_13
Other DBs
NCBI-GeneID: 121332445
NCBI-ProteinID: XP_041253833
LinkDB
Position
Unknown
AA seq 1312 aa
MSRIEKMSILGVRSFGVEDKDKQIITFFNPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVRAQIRLQFRDVNGEVMAVQRSMVCTMKGKTPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VISIENQLEPLKSSLAEVEQNLTKVMRLDNDVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDCKRDLDRATKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLIQSLAAQLELDGFERAPFTERHIASFRRLVKDRQDRDTEDANRMMREFAQ
KETMKQKQIDEIRDKKTGLERTIDLKSDIQNKKQAELKNVKCELQQLEGFSDRISELDEE
IGKMEHELEKAERNSDVETLEQEVQTLQSEKTNLDKALRRLDQEMEQLNLHTTTITQMEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPSKKQLEDWLHGKNKKINQTRDTLANLNKR
LASVEYDKTYASNELRKKEAQLSNHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRRTVVELQDKEIPDLRNKIQNANRDLTGLKGEIEEQESLLQTALS
EEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLGVNLSRTVLQVSKEKQEKKHLWD
TVTSKIELNQKRKQDQQSQIQQLKSAVNELKAEKLQVVSSMQRRRQLEEQTVELSTEVQS
LRREIREAEEQVLPLETKLDKLQQEKEELVNKRTASNKETQEKMNSINEKVKDINKYVKE
IENYIQQGKEDYKKQKESELDEVNSRLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNIKQLMKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFRDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADENVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCINCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIMKCSVSSLGSYVH
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagtttcggggtagaagacaaa
gacaaacaaattatcactttctttaatccattaactattttggtgggaccaaatggtgca
ggaaaaacgaccatcattgaatgccttaaatatatatccactggggattttcctcctggc
accaaaggaaaaacatttgttcatgatcccaaggttgccaatgaaaccgacgttagagct
cagattcggttgcagttccgagatgtcaacggggaggtcatggctgtccagcgctccatg
gtctgcaccatgaaaggcaagactccagagtttaaaacgctggaatctgtcattactaga
acaaagcatggcgagaaggtcagtctgagttccaagtgtgctgaaatagaccgggagatg
atcagcgcccttggtgtttccaaatctgtgcttaacaatgtcattttctgtcaccaagaa
gaatccaactggcccttaagtgaagggaaggccctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcactcgaagctctgcgtcaggtacgactgaaacaaagc
ttgaaggtaaaagagtgtcagacagaactgaaatatctgaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaacagagaagctcaactggctgcttctaaggagaat
gtaatatcaattgagaatcagcttgagcctctaaagagctctctggcagaagttgagcag
aatctcacaaaagtaatgaggttggacaatgatgtgaaggccctggagagcaggaagcgg
cagatggaaaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagagaatagtgaaggagaaggagaag
agattgttggactgtaagcgtgatttagacagagccactaaagagtgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacattgtgaccagggattccttaattcagtctctggcagcccagctggagctg
gatgggtttgagcgggcccctttcaccgaaaggcacatcgccagttttcgcaggctggtg
aaggacaggcaggacagagatacagaagatgcaaatcgtatgatgagagaatttgcacag
aaagaaacaatgaaacaaaaacagatagatgaaataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcagaataagaaacaagcagagctgaagaatgtc
aaatgtgaattgcagcagttggagggattttcagacaggattagtgagttggatgaggag
attggcaagatggaacatgagctggagaaggctgagaggaacagcgatgtagaaacactg
gaacaggaggtacagactctgcaaagtgagaagacaaacctggacaaagctcttaggagg
ttggatcaagagatggagcagttgaatctacacaccacaaccattacccaaatggagatg
ctgaagaaagacaaagcagagaaagaagatcagattagaaaagtaaaatcaaggcattct
gaagaactaacatcactgctgggatactttcccagtaaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgctaatctgaacaaacgg
ctggcatcagtagaatatgataaaacttatgccagtaatgagctaaggaaaaaagaagct
cagttgtccaatcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gacctgaacaaacttcaagatgaaattgaaaaaagttccaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacaactgacagaggagaaccagtcttgt
tgtccagtttgccaaagagtttttcagacagaggctgaactgcaggatgtcatcagtgat
ctgcagtctaaactgcgccttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaagcgtgatgaaatgatgagtcttaagccactgcggcgaactgtagtt
gaactccaagataaggaaattccagacctgaggaacaagatccagaatgctaacagagat
ttaacaggcctgaagggtgagatagaagagcaggaatcacttctccagacagctttgtct
gaggaggaaggtgccaaagcacgtttacaggatataactctgatggaaaggtatcagact
gatatcagggatgttgaacgaaaaattgctcagcaggaggctaagctgctaggtgtcaat
ttaagtagaactgtgcttcaagtaagcaaagaaaaacaagagaaaaaacacttgtgggat
acagttaccagtaaaattgagttaaatcaaaaacgcaagcaggaccagcaaagccagatt
cagcagctgaagagtgcagtcaatgagctcaaggcagagaagctgcaggttgtcagcagc
atgcagcggcggcggcagctggaggagcagactgtggagttaagcactgaggttcagtcc
ttacgcagagagatcagggaagcagaagaacaggtacttcctttggagacaaagttagac
aaattgcagcaggagaaggaggaactagtgaataaaaggactgcaagtaataaagaaaca
caagagaagatgaatagcataaatgagaaagttaaagatataaacaagtacgtgaaagaa
attgaaaactatattcaacaaggcaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcgtttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaaggtggctggaggat
aacctcactctgaggaagcggaatgaagagctgaaagaagttgaagacaatataaaacaa
cttatgaaggagatgggagagatgaaagtcccccagatgaaaaatgagcagaaacatttg
gaggagaaaatagaatctctgaagaggaaccatcacgttgcccttgggcggcagcgtggc
tttgaggaggagattgttcgcttcagaaaggagctccgcgagccacagttcagagatgca
gaagaaaaatacagggacatgatgattgtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaattaacaaaataattcgtgatctgtggcgaagcatctacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgagaatgtctcagccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggacatgcggggaagg
tgcagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtatcaactgtggcattctggccctggacgagcctacaaccaacctcgaccgagaa
aacatcgagtccctggcacatgccctggtggagataataaagagccgcttacaccaacgc
aactttcagctgctggtgattactcatgatgaagattttgttgaacttctgggccgttca
gagtatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatg
aagtgcagtgtcagctccctaggctcctatgttcattag

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