Onychostruthus taczanowskii (white-rumped snowfinch): 121334338
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Entry
121334338 CDS
T07590
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121334338 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otc03019
]
121334338 (PARN)
Enzymes [BR:
otc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
121334338 (PARN)
Messenger RNA biogenesis [BR:
otc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
121334338 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
HRM
Motif
Other DBs
NCBI-GeneID:
121334338
NCBI-ProteinID:
XP_041257294
LinkDB
All DBs
Position
Unknown
AA seq
681 aa
AA seq
DB search
MAAARAHVRAHVRRAGRPRKRSAAAAAAGGAGASSGGRGRGMEVIRSNFKDNLNKVYEAI
EESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKHSMDFLLFQFGLCTFKYDDT
EEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQGFDFNKVFRNGIPYLNQEEE
RQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKFVEKIVDQIEDLLKNEESES
LELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIVITKVDEEERKRREQQKQEK
EQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQFYCPLPDDLSEFKEVTSCVF
PRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKVESAEGFPSYNTASEQLHEA
GYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFNKLFLMRVMDIPYLNLEGPD
LQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSAFVSLSQPEQVQIAVNTSR
YAESYRIQTYAEYVEKKKHEEKQAKRKCTEDSWKEMERKRLKTQCTPYVSQSRYYCVNSF
TGTSTVGKRSMSPIEEETVSDDMEEGEEGQDPENDQTDSCAESLPDGKKRAKKLKKIKTE
QVPAGSLTTSSTGIFEVPETW
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcccgggctcacgtgcgcgctcacgtgcggcgcgcggggcggccccggaag
cgctcggcggcggcggcggcggcgggcggtgccggagcgagctctggcgggcgggggcga
gggatggaggtgatcaggagcaattttaaggataatctaaacaaagtgtatgaagccatt
gaagagtcggacttcctggccatcgatggagagttttcagggatcagtgatgggccttca
gttagtgcattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaag
cattccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgacaca
gaagaaaagtatataatgaagtcatttaatttctatatttttccgaaaccctttaacaga
aattcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaa
ggatttgattttaataaagtttttcgcaacggaattccatatttaaatcaggaagaagag
agacagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctg
tcatacatttctcctaattccacaaagtgccctgtaacaattcctgaagaccagaaaaaa
tttgtagagaaaatagtggatcagatagaagacttattaaagaatgaagaaagtgaaagt
ttggaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctgg
aagtatccaaaaggcatccacgtggaaactctggagtcagataagaaggagagatatatt
gttattactaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagaaaaa
gaacaggaagaattgaatgatgctgtaggattttccagagttgttcatgccattgctaat
tctggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcag
ttctattgccccctacctgatgacctaagtgagttcaaggaagtcacgtcttgtgtcttt
ccccggttactggatactaaactgatggcaagtacacaaccttttaaggagatcattaat
aatacatcgcttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaa
gttgaaagtgcagaaggatttccaagttacaatacagcatctgaacaactccacgaagca
ggatatgatgcttacattactggactgtgcttcatttccatggctaatttcctaggttca
ttcctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaaccttttttt
aacaagctatttcttatgagagtaatggacataccatatctcaatttggaaggaccagac
ttgcagcccaaacgagatcatgttcttcatgttacttttcccaaagagtggaagactagt
gacctataccagcttttcagtgcctttggtaacattcaggtttcatggattgacgataca
tcagcatttgtctcattgagccagccagagcaagtacaaatagctgtaaacaccagccgg
tatgctgaaagttataggatccagacatatgcagaatatgtggagaaaaaaaaacatgaa
gagaaacaggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagagg
ttaaaaacccagtgcacaccttacgtttcccagagtcgatactactgtgttaacagtttt
acaggtaccagtacagtgggaaagagaagcatgagtcctattgaggaggaaactgtttct
gatgatatggaagagggagaagaaggccaagatccagaaaatgatcagacagactcctgt
gcagagtcccttccagatggtaagaagagagccaaaaagttgaaaaagatcaagacagaa
caagttccagcaggaagcctcacaactagttccactggaatttttgaggtccctgaaaca
tggtag
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