Onychostruthus taczanowskii (white-rumped snowfinch): 121336742
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Entry
121336742 CDS
T07590
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otc04147
]
121336742 (COL18A1)
00535 Proteoglycans [BR:
otc00535
]
121336742 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
otc00536
]
121336742 (COL18A1)
Exosome [BR:
otc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121336742 (COL18A1)
Proteoglycans [BR:
otc00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
121336742 (COL18A1)
Glycosaminoglycan binding proteins [BR:
otc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121336742 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121336742
NCBI-ProteinID:
XP_041262057
LinkDB
All DBs
Position
Unknown
AA seq
1742 aa
AA seq
DB search
MAPPHLEFLLLLACYFSCSKAQLLDWVWDSMKITGSPAVPGEAVPASPTSAAAPAPSPSP
GMWGGEVAGNVTTPRQQEPDPATATPVGEGAAAKTTEQWDRNATGLVESTAWPSIAPLHS
MSPAPGQQVASSPTNDPQLLGTGTHKDPQLPGSGTTEDLQLQGSGNTEDPQLLGSETSKD
PQLLWSGMTEDLQLRETGTTEHLLLLRMSTTEDAQFLGSAIPKDPQVLGTGTTEDLKLLG
SGTTENPQLLRMGTTEDPQLLRSGTTEDPQLLGLGTTEDPQLLGMMSTTDLHLLVTGRTK
DPQLLGTGTTEDSQPLGTGTTEDPQPLGTGTTEDPQLLGTGTTEDPQVLRTRTTKVPQLP
DMRTTENLQFLVMRNTELLRTVTTENPELLENTENPQFLRMVTTENPEFLGTGTPTAMET
RVSLQRPAGLQPESLSAEISLLELIGDPPTEEIHRIYGPDNNPGYVFGPNANTGQVARYH
LPSPFYRDFSLLFHIQPTTPRAGVLFAVTDSSQSIIYVGVKLSELRAGQQQIIFYYTEPG
SPSSYPAATFSVPTLLNQWTRFAISVEEEEVVLYLDCEEHERVRFERSPDEMELEEGSGL
FVAQAGGADPDKYQGVIADLKLQGDPRAAERQCEEEEDDAEVSGDFGSGMEGGQQPSGKV
EGVPGLLDAVPVTSPPVVGGSGPRSGGGSLQQAERTRAEETLRVSMGGAGRKGEKGEKGE
RGLKGDSGTSGIVGPGSVKGQKGEKGDLGVKGSAGFGYPGSKGQKGEPGDPGPPGTLSRH
ADGSLVEQVTGPPGTPGKDGAPGRDGEPGDPGEDGKPGEMGPPGFPGMPGEPGLKGEKGD
PGVGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGFAGDLESLRGPRGPPGPPGPPGVP
GLPGEPGRFGMNRTDLPGPPGLPGRDGIPGPMGPQGPPGRDGEAGQPGPKGEQGDMGDLG
LPGLPGPKGNKGEMGPAGPPGEMGLAGLPGPIGPRGQPGPPGPPGPPGLGYEAGFGDMEG
SGLSFTPGPPGPEGPQGVPGLPGVKGEVGSPGEPGLPGPKGDAGMPGMDGRPGLEGFPGP
QGPKGDKGSTGEKGERGQDGVGLPGPPGPPGPPGQVISVSSADKSLMAFPGPEGRPGRAG
FPGPVGPKGDQGSTGPQGAPGLKGEKGEPGVIISPDGTVVTAKVKGEKGEPGLQGPMGPS
GPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADALGLRGPPGPPGPPGPPGPPGSIVY
NNGNTFSDSSHPGFPGFHQFSGQKGEKGDTGPPGPPGQFPYDVSHFGTSLRGDKGDAGPK
GEKGEPGSTPLYSPGVSGLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGIGYEGRQ
GPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPPGTNGMSLGLQAMPTYQAMLSAAH
ELPEGSLVFLTDRQELYVRLRGGLRRVLLEEHNLIPSSALDNEVYDKPPTLHYAGPQPRG
PLHPLRNHVPSATARPWRGDEVVANQHRLPEQPLLHHQHELINGYYIHRRPDPAPVAAHV
HQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQVGLAGTFRAFLSSRLQDLYSIVR
RADRAAVPIVNLRDEVLFNNWEALFTGSGAPLRTGARILSFDGRDVLRDAGWPQKSVWHG
SDAKGRRLPESYCETWRTEEHAVTGQSSSLASGKLLEQATSSCQHAFVVLCIENSFMTAT
KK
NT seq
5229 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcacttggagtttctgctcctcctggcttgttacttctcctgctccaaa
gcacagctcctggactgggtttgggacagcatgaagatcacaggaagcccagcagtaccc
ggtgaggcagtcccggcgtcgccaacctcagcagcggctccggctcccagcccgtcccca
gggatgtggggtggcgaggtggcaggaaatgtcaccaccccacggcagcaggagccagat
cctgctacagcaacacctgtgggtgagggagccgcagccaaaaccacagagcagtgggac
aggaatgccacagggctggtggagagcacggcgtggccaagcattgctcctctccacagc
atgtcacctgccccaggacagcaggtggccagcagccccaccaatgacccccaactcctg
ggaacagggacccacaaggacccccagctgccagggtcagggaccactgaggacctgcag
ctccaggggtcagggaacactgaggaccctcagctcctggggtcagagacctctaaggac
ccccagctcttgtggtcagggatgactgaggacctgcagctccgtgagacagggaccact
gagcacctgctactcctgaggatgagtaccaccgaagacgcccagttcctggggtcagcg
atccccaaggatccacaggtcttggggacagggactactgaggacctgaagctgctgggg
tcagggaccactgagaacccacaacttctgaggatgggaaccactgaggacccccagctc
ctgaggtcagggactactgaggacccgcagctgctggggttgggcaccactgaggaccca
cagctcctagggatgatgagtaccacagacctgcatctcctggtgacagggcgcaccaag
gacccacagctcctggggacaggcaccactgaggactcacagcccttgggtacggggacc
actgaggacccacagcccttggggacagggaccactgaggacccacagctcttggggaca
gggaccactgaggacccccaggtcttgcggacaaggaccaccaaggtcccacagctccca
gacatgaggaccactgagaatctgcagttcctggtgatgaggaacactgagctcctgagg
acagtgaccaccgagaacccagagctcctggagaacactgagaacccacagtttctgagg
atggtgaccaccgagaacccagagttcctggggacaggaactcctacagcaatggagaca
cgggtgtccttgcagagaccagcgggtctccagccagagagcctgagtgctgagatcagt
ctgctggagctgattggggacccaccaacggaggagatccacagaatttatggccccgac
aacaaccctggctacgtctttggtcccaacgccaacacgggccaggtggcccggtaccac
ctgccaagccccttctaccgggacttctcgctgctgttccacatccagcccaccacaccc
cgggccggcgtgctctttgctgtcacggactcctcgcagagcatcatctacgtgggtgtc
aagctctcagagctacgtgcgggccagcagcagatcatcttctactacacggagccgggc
tcgcccagctcctacccagctgccaccttctctgtgcccactctgctcaaccagtggacg
cgcttcgccatcagcgtggaggaggaggaagttgtcctctacctggactgtgaggagcac
gagcgcgtccgcttcgagcgctccccggatgagatggagttggaagagggctccgggctc
tttgtcgctcaggctggaggggctgacccggataaataccagggggtgattgcagatttg
aagctccaaggggaccctcgggcagccgagcgccagtgcgaggaagaggaggatgacgca
gaggtctctggggattttggcagtgggatggaaggtggacagcaaccctcaggcaaggtt
gagggtgtcccagggctgctggatgctgtccccgtgacctccccccctgtggtggggggc
agtggcccgaggagtggcgggggatccctgcagcaagccgagaggaccagagcggaggag
acgctgcgggtctccatgggaggcgctggtcggaaaggcgaaaagggggagaagggggaa
cgtggcttgaaaggggactcagggaccagtggcattgtagggccaggcagtgtcaagggt
caaaagggggagaaaggagacctgggtgtcaagggcagtgctggatttggctatcctggc
tctaagggccaaaaaggagaaccaggtgaccctggaccgcccgggaccctctctcggcat
gctgatggctcgttggtggagcaggtcactggccctccagggacaccagggaaggacgga
gcccctggcagggatggcgagcctggagatcctggagaggacggcaagcccggtgaaatg
gggcccccagggttccctgggatgccgggggagccgggcctgaagggggagaagggtgac
ccaggtgtggggccgaggggaccccctggaccacctggccctccaggaccaccgggaccc
tcctccaagaacgacaagctgaccttcatcgacatggagggctctggcttcgctggtgac
ctggagagcctgcggggtccacgagggccacctggtcccccagggccacctggcgtgccc
ggtttgccaggggagccaggacggtttgggatgaaccgcacagacctgccgggaccacct
gggctgccgggcagagacgggatccccgggccaatgggtcctcagggtcctccaggaaga
gatggggaggctgggcagccagggcccaaaggagagcagggcgatatgggtgaccttggc
ctccctggcctaccaggacccaagggcaacaaaggagaaatgggaccagcaggaccccca
ggagaaatgggcttagctggccttcccgggcccatcggaccccgagggcagccagggccc
cccggccccccaggaccaccggggctgggctacgaggctggatttggtgacatggagggc
tcggggctgtcatttacccctggaccaccagggcctgaaggaccacagggtgtgccggga
ctgccgggggtgaagggagaggtcggcagccccggagagcctggcttgccgggaccaaag
ggagatgctggcatgcctggcatggatggccgccctggtctggagggcttccctggacca
cagggacccaaaggtgacaaaggcagcaccggtgagaagggagagcgaggccaagatgga
gtggggctacctggcccccctggcccacctggtccccctggacaggttatcagtgtctcc
agtgcagataagtccttgatggcttttcctggtccagagggcagaccaggccgtgctggc
ttcccgggtccagtgggaccaaaaggagaccaggggtcaactggtccccagggtgcccca
gggttgaagggggagaagggggagcccggcgtcatcatcagccccgatgggactgtggtc
actgccaaggtgaaaggagaaaagggggagccagggctgcagggccccatgggaccatca
ggtcctccaggacgagcagggatgaagggagagatcggctttccgggcagacccggacgt
cctggcatgaacgggctgaagggcgagaagggtgatcctgcagacgcgctgggcttgcgg
ggtcccccaggacccccaggaccccctgggccccctgggccacctggcagcatagtctac
aacaatggtaataccttcagtgactccagccacccggggttccctggtttccaccagttc
tcaggacaaaagggagagaaaggtgacactggacccccaggacccccaggccagttcccc
tatgatgtgagtcactttggtaccagcctgcggggtgacaagggggatgcaggtcccaag
ggtgagaagggcgagccaggcagcaccccactctacagtcccggagtctctggacttcca
gggcctccagggccccagggataccccgggctgccaggtcccaagggggacagtattgtt
gggccaccggggcctccaggacctcagggtcctcctggtatcggatacgaggggcggcag
ggcccccctggccctcctggtccgcctgggccaccctccttcccaggtccccacagacaa
gctgtcagcatccctggacccccaggaccaccaggaccccctggaccaccaggcaccaat
gggatgtccttggggctccaggccatgcccacgtaccaggcgatgctgagtgctgcgcat
gagctgcccgagggcagcctcgtcttcctgacggaccggcaggaactctacgtccgcctg
cgtgggggcctccgcagggtgctgctggaggagcacaacctgatccccagttcggctctg
gacaacgaggtgtatgacaagccacccactctccactacgctggcccccagccccgcggg
cccctgcacccactccgcaaccacgtcccctcagccactgcccgtccctggcgtggggat
gaggtggtggccaaccagcaccgcctgcccgagcagcccctgctccaccaccagcacgag
ctcatcaatgggtactacatccaccgccggccagatcctgcccctgtggccgcccatgtg
caccaggacttccagcctgctctgcacctggtggccctgaacaccccgctgagcggtggc
atgcgcggcatccggggcgccgatttccagtgcttccagcaagcccggcaggttggactg
gctggcaccttccgcgccttcctgtcctcgcgcctgcaggatctctacagcatcgtgcgc
agggctgaccgcgccgccgtccccattgtcaacctccgggatgaagtgctcttcaataac
tgggaagcccttttcacgggcagcggggcccctctcagaaccggcgcccgcatcctctcc
tttgatggccgggatgtcctgcgggatgcgggatggccacagaagagtgtctggcatggc
tcggatgccaagggtcggcgcctgcccgagagctactgtgagacatggcggacagaggag
catgcagtcaccggccagtcttcctccttggcctctggaaaactgctggagcaggcaacc
agcagctgccagcacgcctttgttgtcctctgcattgagaacagcttcatgaccgccacc
aaaaagtga
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integrated database retrieval system
