Onychostruthus taczanowskii (white-rumped snowfinch): 121336743
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Entry
121336743 CDS
T07590
Symbol
COL6A1
Name
(RefSeq) collagen alpha-1(VI) chain
KO
K06238
collagen type VI alpha
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc04510
Focal adhesion
otc04512
ECM-receptor interaction
otc04518
Integrin signaling
otc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121336743 (COL6A1)
04518 Integrin signaling
121336743 (COL6A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121336743 (COL6A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121336743 (COL6A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otc04147
]
121336743 (COL6A1)
00536 Glycosaminoglycan binding proteins [BR:
otc00536
]
121336743 (COL6A1)
Exosome [BR:
otc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
121336743 (COL6A1)
Glycosaminoglycan binding proteins [BR:
otc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121336743 (COL6A1)
Hyaluronan
Extracellular matrix or blood plasma proteins
121336743 (COL6A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
DUF1194
vWA-TerF-like
DUF5507
Motif
Other DBs
NCBI-GeneID:
121336743
NCBI-ProteinID:
XP_041262059
LinkDB
All DBs
Position
Unknown
AA seq
1023 aa
AA seq
DB search
MKLRDFLLTLLLPAGFLWRGSCAQRPEIITQVSSTEDCPVDLFFVLDTSESVALRVKPFG
DLVTQVKDFTNRFIDKLTQRYYRCDRNLVWNAGALHYSDEVVLIKSLTPMPSGQNELKNR
VSSVNYIGKGTYTDCAIKRGIEELLIGGSHHKENKYLIVVTDGHPLEGYKEPCGGLDDAA
NEAKLLGIKVFSVAISPNHLDQRLNIIATDHAYRRNFTATSLKPTREIDVEETINTIIDM
IKLNTEQSCCSFECQPPRGPPGPPGDPGHEGERGKPGLPGQKGEAGDPGRPGDMGPVGYQ
GMKGDKGSRGEKGSRGAKGAKGEKGRRGIDGIDGRKGEAGYPGLPGCKGSPGFDGAQGPP
GPKGDPGAFGPKGAKGEPGNDGKPGRQGIPGNPGEKGVPGNQGEPGPAGETGDEGALGED
GPPGERGSNGERGPPGSPGDRGLRGQPGQPGPPGDQGREGPLGPPGDQGEPGPSGPKGYR
GDDGPPGSEGPKGLPGAPGLPGDPGLMGERGEDGPPGNGTIGFTGAPGQPGDRGNPGING
TKGYVGPKGDEGEAGDPGNDNLTPGPSGIKGAKGHRGREGPPGPPGPVGPPGPDECEILD
IIMKMCSCCECTCGPVDLLFVLDSSESIGLQNFQIAKDFIIKVIDRLSKDERVKFEAGES
RVGVVQYSHDNTQELVAMGDANIDNIGALKQAVKNLQWIAGGTYTGEALQFTKDNLLRRF
TSDKRVAIVITDGRSDTLRDPTPLNSLCDVTPVVSLGIGDIFRNPPNPDHLNDIACLSRP
TRPGLSIQRDNYAELLDDTFLQNITSYVCQEKKCPDYTCPITFTGPADITLLVDSSTSVG
SKNFETTKKFVKRLAGRFLEASKPTDDSVRISVVQYSGRNQQKVEAQFLYNYTVIAKAID
NMEFMNDATDVNSALQFITELYRRSARTAAKKRVLVFSDGHSQGITARAIERAVQDAQKA
DIEIYVLAVGSQANEPNIRVLVTGKSADYDVAYGERHLFRVPDYSSLLRGVFYQTVSRKI
AVD
NT seq
3072 nt
NT seq
+upstream
nt +downstream
nt
atgaagctgcgagactttctgctcactctgctgctcccggccggcttcctgtggcggggc
tcatgtgctcagcgcccagaaatcatcacccaagtctcaagcacagaagactgccctgtg
gacctgttcttcgtcctggacacctcagagagtgttgccctgagggtgaaaccctttggg
gacctggttacccaagtgaaagatttcaccaaccggttcattgataagctcacccagagg
tactaccgctgcgaccgcaacctggtgtggaacgcgggagcgctgcactacagcgatgag
gtggtgctcatcaagagcctcacaccgatgcccagtgggcagaacgagctgaagaaccgt
gtgtcatctgtcaactatatcgggaagggcacctacaccgactgcgccataaagcggggc
atcgaggagctgctcatcggtggttcccatcacaaggagaataaatacctgattgtggtg
actgatggacatcccttggaaggttacaaggagccctgtggaggcctggatgatgctgcc
aatgaagccaaactcctggggatcaaagtgttctctgttgccatctcccccaaccacttg
gaccagcggctgaacatcattgccacagaccacgcctaccgacgcaatttcactgccacc
agcctgaaacccacccgggagattgatgtggaggagaccatcaacaccatcatcgacatg
attaaacttaacacagagcaatcgtgctgctcctttgagtgccagcctcccagagggccc
cccggacctcctggcgaccctggccatgagggagaacgcggcaagccaggtcttcccggc
cagaaaggagaggctggggacccaggcaggccaggagacatgggacctgttggctaccaa
ggaatgaagggtgacaaaggaagccgaggagaaaagggctcaagaggagccaaaggagcc
aagggtgagaaaggcagacgtggaatcgatggcattgatggcaggaagggtgaagctgga
taccctggattacctggctgcaaaggctcacccggattcgacggagctcaaggcccacct
ggaccaaagggagatcctggtgcttttggacccaagggagcaaagggggagcctgggaac
gatggaaagcctggccgacaggggattcctggcaaccctggagagaagggagttcctggg
aaccagggtgagcctggaccagcaggagagacaggtgacgagggtgctctaggtgaggat
ggtcctcctggagaacggggcagcaatggagagagaggacccccaggctcgccgggtgac
cgtgggctgagaggacagccgggacagccaggaccacctggagaccaagggcgggaagga
cccctcggtccacctggcgatcagggtgagcctggaccttcaggacccaaaggctacagg
ggagatgatggcccccccggcagtgagggcccaaagggattgcctggagcacctgggctg
cctggggaccctgggctgatgggagagaggggggaggatggtcctcctgggaatggcaca
attggattcacaggtgccccagggcagccaggagacagaggcaaccctggcattaacgga
acaaaaggctatgttggacctaaaggtgatgaaggggaagctggcgaccctggcaatgat
aacctgacccctgggcccagtggcatcaaaggagccaagggccacaggggacgtgaaggt
cccccgggaccaccaggacccgtggggcctccaggaccagatgaatgtgaaatcttggac
atcatcatgaagatgtgctcttgctgcgagtgcacctgtggtcctgtcgacctcctgttt
gtgttggacagctccgaaagcatcggcctgcagaacttccagattgccaaggacttcatc
atcaaagtcatcgaccgcctgagcaaggatgagcgggtcaagtttgaagctggggagtcc
cgtgtgggggttgtgcagtacagccatgacaacacgcaggagctggtggccatgggggat
gccaacatcgacaacatcggagcgctcaagcaggcagtcaagaacctgcagtggatcgct
gggggcacctacactggggaggccctgcagttcaccaaggacaacctgctgcggaggttc
acatccgacaagcgcgtggccatcgtcatcacagatgggcgctccgacaccctgcgggac
cccaccccgctcaactccctgtgcgatgtcaccccggtggtttcccttgggatcggtgac
attttccggaaccctccaaatccagatcacctgaatgacattgcttgtttaagcagacca
accaggccaggactgtccattcaaagggacaactatgccgagctcctggatgacaccttc
ttgcagaacatcacctcatatgtctgccaagagaaaaaatgtcctgactacacctgccca
atcaccttcaccgggccagcagacatcactctgctggtggacagctccaccagcgtgggg
agcaagaactttgagaccaccaagaagttcgtgaagcggctggcggggcggttcttggag
gccagcaagcccactgacgactctgtgcgcatctcggtggtgcagtacagcggccggaac
cagcagaaagtggaagctcagttcctgtacaactacacggtcattgccaaggccattgac
aacatggagttcatgaatgatgccacggacgtgaactctgctctgcagttcatcacagag
ctgtaccggcgctctgcccgcaccgcagccaagaagagggtgctggtgttttctgacgga
cactcccaagggatcactgccagggccattgagagggctgtgcaggacgcacagaaggct
gacattgagatctacgtgctggcagtgggaagccaagccaatgagcccaacatccgtgtc
ctggtcacggggaagagcgcagattacgatgtggcttatggggagcggcatcttttccgt
gtgcctgactacagctctctgctgcgtggtgtcttctaccaaactgtgtccaggaagata
gctgttgactga
DBGET
integrated database retrieval system
