Onychostruthus taczanowskii (white-rumped snowfinch): 121339180
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Entry
121339180 CDS
T07590
Symbol
XAB2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
121339180 (XAB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otc03019
]
121339180 (XAB2)
03041 Spliceosome [BR:
otc03041
]
121339180 (XAB2)
Messenger RNA biogenesis [BR:
otc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121339180 (XAB2)
Spliceosome [BR:
otc03041
]
Complex B
Other components
Prp19-related factors
121339180 (XAB2)
Complex C
121339180 (XAB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
TPR_19
TPR_12
Suf
TPR_8
TPR_2
TPR_15
TPR_7
TPR_16
PPR
ARM_TT21
ARM_TT21_C
TPR_1
Motif
Other DBs
NCBI-GeneID:
121339180
NCBI-ProteinID:
XP_041266711
LinkDB
All DBs
Position
Unknown
AA seq
1016 aa
AA seq
DB search
MAAAEAEMAAREEPPGAAPGAEPGAEQQPGAVAEPGAMEEPGAMAEPAPGPAGEAVADPG
AGPGPERPELCFEEEEVQHEEELLRNPFSVRGWLRYAQARQRGPRPRLNQIYERALRELP
GSYKLWYQYLRQRRAQVKGRCPSDPAFEEANAVHERALVFMHKMPRIWLDYCQFLVEQGR
VTRTRRTFDRALRALPITQHRRLWPPYLSFVRRHPLPETAVRVFRRFLKLCPEEAEQYVA
YLRSVGRLDEAAQVLARLVNDERFVSRQGKSNYQVGTWAHPDRVRSLDAGGIIRGGLTRF
TDQRGRLWGALADCYVRCGHLEKARDVYEEAVQTVMTVRDFTQVFDSYARFEESVIAALL
DTQAQLGHGQDEEVELELRLARFERLMARRPLLLNSVLLRQNPHNVHEWHKRVALHQGQP
DKIIQTFTEAVRTVDPQRATGRPHELWVAFARFYEDNGQLDDARSILSRATRVRFRRVED
LAAVWCEFGELELRHQRHQEALSVLRKATALPARRAEYFDSSEPVQNRLYKSLRVWSMLA
DLEESLGTFQSTRSVYERILDLRIATPQIVINYALLLEEHGRFEDSFKAYERGIALFRWC
PHGDLWLTYLSKFVARYGGRKLERARDLFEQALDGCPPQHAKTIYLLYARLEEQFGLARR
AMAVYERGTRAVPPEQQRDMFHIYIRRAAELFGVTHTRPIYQRAIEVLGDDAARELCLRF
ADMECKLGEVDRARAIYTYCSQICDPRITGSFWQTWKEFEIRHGNEDTIREMLRIKRSVQ
ATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGLDEMKLLEQRAEALAAEAQRDTPRPA
QQVLFVRAEAAEAPLSLQGNPEEIDLDEEGEEPDGTGAGLTEGPEVGLFPPEVALPPTGS
SFRSRKLVSPNRKLISRPPELFSLPPEVAFPTPEVALTLPETFGVERLQQRPLLERPVRC
VRAPHGAGGGAISGAHAQEQPAGGAAEQHPRPRPHRKHQARQRRRRRPLTARRTEQ
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccgaggcggagatggcggcgcgggaggagccgccgggagcggccccggga
gcggagcccggcgcggagcagcagccgggagcggtggcggagcccggagcgatggaggaa
cccggagcgatggcggagccggcaccgggacccgcgggggaagcggtggcggatcccgga
gcggggccgggcccggagcggcccgagctgtgcttcgaggaagaggaggtgcagcacgag
gaggagctgctccggaacccgttctcggtgcgcggctggctgcgctacgcccaggcccgg
cagcgcgggccccgcccccgcctcaaccagatctacgagagagccctgagggagctgccc
ggcagttacaagctgtggtaccagtacctgcggcagcgccgggctcaggtcaaaggtcgc
tgtccctcggaccccgccttcgaggaggccaacgctgtccacgagagggcgctggtgttc
atgcacaagatgccgcggatctggctggattactgccagttcctggtggagcagggccgt
gtcacgcgcacgcgccgcacgttcgaccgggcgctgcgggcgctgcccatcacgcagcac
cggcgcctctggccgccctacctgagcttcgtgcgccgccacccgctgcccgagaccgcc
gtgcgcgtcttccgccgcttcctcaagctgtgtcccgaggaggccgagcagtacgtggcc
tacctgcgctccgtgggccgcctggacgaggccgcgcaggtgctggcccggctggtgaac
gacgagcgcttcgtgtcccgccagggcaagtccaactaccaggtgggcacctgggcgcac
cccgaccgcgtgcgctcgctggacgccgggggcatcatccgggggggcctgacgcgcttc
accgaccagcggggccggctctggggggcgctggccgactgctacgtgcgctgcggccac
ctggagaaggcccgggacgtgtacgaggaggccgtgcagacggtgatgacggtgcgggat
ttcacgcaggtgttcgacagctacgcgcgcttcgaggagagcgtcatcgccgcgctgctg
gacacgcaggcgcagctgggccacggccaggacgaggaggtggagctggagctgcgcctg
gcgcgcttcgagcggctgatggcgcggcggccgctgctgctgaacagcgtgctgctgcgc
cagaacccgcacaacgtgcacgagtggcacaagagggtggccctgcaccagggacagccc
gacaagatcatccagacgttcaccgaggccgtgcgcacggtggatccccagcgcgccacc
ggccgcccccacgagctctgggtggccttcgcgcgcttctacgaggacaacgggcagctg
gacgacgccaggtccatcctgtcccgtgccacccgggtgcggttccgccgtgtcgaggac
ctcgccgccgtctggtgcgagttcggggagctggagctgcgccaccagcgccaccaggag
gcgctcagcgtgctgcggaaagccacggctctccccgcgcgccgcgccgagtacttcgac
agctcggagccggtgcagaaccggctctacaaatcgctgcgcgtgtggtccatgctggcc
gacctggaggagagcctgggcaccttccagtccacgcgcagtgtgtacgagcgcatcctg
gacctgcgcatcgccaccccccagatcgtcatcaactacgcactgctgctggaggagcac
ggccgcttcgaggacagcttcaaggcctacgagcgtggcatcgcgctgttccggtggtgt
ccccatggggacctgtggctcacgtacctgtccaagttcgtagcccggtacggcgggcgg
aagctggagcgcgcccgggacctcttcgagcaggcgctggacgggtgtcccccccagcac
gccaagaccatctacctgctgtacgcccgcctggaggagcagtttgggctggcgcgccgg
gccatggcggtgtacgagcgcggcacgcgggccgtgcccccggagcagcagcgcgacatg
ttccacatctacatccgccgcgccgccgagctcttcggggtcacccacacgcgccccatc
taccagagggccatcgaggtgctgggtgacgacgcggcgcgggagctgtgcctgcgcttc
gccgacatggagtgcaagctgggggaggtggatcgggcccgcgccatctacacctactgc
tcgcagatctgcgacccccggatcacgggcagcttctggcagacctggaaggagtttgag
atccgccacgggaacgaggacaccatccgggagatgctgcgcatcaagcgcagcgtacag
gccacctacaacacccaggtgaacttcatggcctcgcagatgctcaaggtgtcgggcagc
gccaccggcacagtgtcagacctggccccggggcagagcggcctggacgagatgaagctg
ctggagcagcgcgccgaggcgctggcggccgaggcccagcgggacacgccccgccccgcc
cagcaggtgctgttcgtcagggccgaggccgcggaggcgccgctgtcgctgcaggggaac
cccgaggagatcgacctggacgaggagggggaggagcccgacggtacgggggcggggcta
acggaggggccggaagttggtctctttccgccggaagttgctctcccacccaccggaagt
agctttcgctcccggaagttagtatctcccaaccggaagttaatctcccgcccaccggaa
ttgttctcccttcccccggaagttgctttcccgacaccggaagttgctctcaccctcccg
gaaacgtttggcgtcgaacggctgcagcagcgccccctgctggagcggcccgtgcggtgc
gtgcgggcccctcacggcgccgggggcggggccatctccggggcgcatgcgcaggaacag
cccgcggggggcgctgctgagcagcacccccggccccgcccccaccggaagcaccaggcg
cggcagcggcggcggcggcgccccctgacggcccggaggactgagcag
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integrated database retrieval system
