Onychostruthus taczanowskii (white-rumped snowfinch): 121342406
Help
Entry
121342406 CDS
T07590
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otc03016
]
121342406 (RTCB)
Enzymes [BR:
otc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121342406 (RTCB)
Transfer RNA biogenesis [BR:
otc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121342406 (RTCB)
Prokaryotic type
tRNA splicing ligases
121342406 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
121342406
NCBI-ProteinID:
XP_041272742
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDALEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggagggcgttttctacgtgaacgac
gcgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggcttcctgcctgctatgaaacagattgggaatgtggctgcattgcctggcattgttcac
agatcaataggccttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggctttgacatc
aactgtggcgtccgcttgctgcggacaaacttggatgaaagtgatgtgcagcctgtgaaa
gagcagctcgcccaggctatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcactggagatgggtgtggactggtctctc
cgagagggctatgcctgggcagaggacaaggagcactgtgaggaatatggaaggatgcta
caggctgatcccaacaaagtctcttcaagggcaaagaaaaggggcctgcctcagctgggg
accctgggagccggaaatcattatgccgagatccaggtggtggatgagatttacaacgaa
tacgctgccaagaaaatgggcattgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagagggctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaatgatcgccagctggcgtgtgccaggattgcctct
gcagagggacaggattacctgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttccatgactttcctaacacggcaggcctttgccaaagtcttcaacacaacccca
gatgaccttgacatgcatgttatctatgatgtgtctcacaacattgccaaagtggaacag
catgtagtggatggaaaggagcggactctgctggtgcacagaaagggatctaccagagcc
ttcccccctcaccatcctcttattgctgttgattatcaactgactggacagcctgttttg
attggtggcacaatgggcacctgcagctatgtcctcactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggacgttctggacaagctggctgacatgggtattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
DBGET
integrated database retrieval system
