Onychostruthus taczanowskii (white-rumped snowfinch): 121343119
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Entry
121343119 CDS
T07590
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc04382
Cornified envelope formation
otc04510
Focal adhesion
otc04512
ECM-receptor interaction
otc04518
Integrin signaling
otc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121343119 (COL4A1)
04518 Integrin signaling
121343119 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121343119 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
121343119 (COL4A1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
121343119 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
otc04147
]
121343119 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
otc00536
]
121343119 (COL4A1)
Exosome [BR:
otc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
121343119 (COL4A1)
Glycosaminoglycan binding proteins [BR:
otc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121343119 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
121343119
NCBI-ProteinID:
XP_041273952
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MRLWLGFGLLLSAELSAVSAAGCSGCGKCDCSGVKGQKGERGLPGLQGVIGFPGMQGPEG
PPGAPGLKGDTGEPGLPGTKGTRGPPGVSGFPGNPGLPGIPGQDGPPGPPGIPGCNGTKG
ERGPVGPPGLPGLTGSIGPPGPPGMKGDPGDVIGLVSPGVLKGEKGFPGQPGLPGPPGAS
GFQGPMGPMGPPGEPGPPGPPGLPGEKGYMGLGFQGPKGEKGEQGVRGPPGPPGPAPHMK
EKGSEIIKGEKGDPGEKGEKGIPGVPGSGFKGDRGDPGQPGPRGKPGKDGEPGLKGEPGL
PGGFGIPGRPGEPGTKGDKGERGYPGPPGRMIDAGPIDTFGEKGDPGVSGLPGLKGQKGE
KGFPGAQGIPGPPGRPVPDRVGSPGVPGERGEKGEKGSPGFPSPGSPGRDGFPGPPGLPG
PPGPPGKTDGIDQCQQGEPGAPGSPGLPGRDGFPGEMGEKGEKGEACTLCDKVGPPGLPG
PQGPPGPSGFPGQAGFKGDRGLPGLDGLPGVPGPPGTPGLIGSPGPKGEPGDFTYDSILK
GEKGDPGFPGQPGTPGREGRPGKDGFPGPQGPKGTPGTAGLKGERGPPGQPGFPGVRGER
GFPGPPGIGAAGLPGEKGDRGFAGTPGLPGLPGAKGEAGRTISLPGPPGADGLPGPPGFP
GPQGDKGNPGLPGRPGLPGEKGAVGQPGIGFPGPPGPKGFQGQPGSPGQPGTPGTPGLDG
LPGVPGLQGQKGEPGVGLPGPKGLPGPPGPAGIPGEKGSPGLPGLRGEQGFPGIPGQQGF
RGDPGLPGLQGLQGPPGAPGLGPPGLPGPAGQPGPQGPPGFPGVKGERGFPGVPGLDMPG
PKGDKGSPGQPGVPGSVGLPGLPGPQGAVGLKGSTGPKGEMGVMGTPGLPGTPGPVGDRG
FPGEKGSQGFKGVIGPQGDPGVKGDKGEAGLPGKPGTIDNMDMVSLKGQKGDQGEKGDHG
ATGEKGLRGDYGEPGIPGRDGEPGTPGQPGPKGDQGPPGYPGDPGVPGQKGSVGEMGLPG
TPGEKGLPGVPGAPGTPGFPGQKGEKGDKGAPGFPGIGFPGAPGEKGEPGRTGSPGLSGD
KGEKGSAGIPGMPGAPGPKGSPGMAGFPGSPGRHGEKGEKGLPGLSGIPGLKGEPGEPGV
PGPAGAIGQKGEPGYDGIPGAAGAKGEQGLPGRGLPGFPGAKGDKGAKGEVGFPGSPGSP
GIPGLKGEPGYAGPPGPKGSQGLPGLPGSAIEGPKGDRGPQGQPGLPGLPGPTGPPGPPG
LKGAKGEQGSNGWPGTPGGPGMKGDPGFQGLPGSPGLPGDVGPKGDLGPPGVPGVPGPKG
TPGFPGLKGERGDQGLPGSKGLQGPPGPPGPFQLIKGDPGLPGPVGPVGLKGFPGLPGPK
GQQGVTGPSGVPGPPGSPGFDGQPGQKGEAGPFGPPGPRGFPGPPGPDGLPGAMGPPGAP
SVAHGFLVTRHSQTIEEPSCPFGTRLIYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMNMAPITGDNIRPFISRCSVCEAPAMVIAV
HSQTIQIPPCPEGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERNEMFRKPTPSTLKAGDLRSNVSRCQVCMRKT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgcggctctggctgggcttcgggctgctgctgagcgccgagctcagcgccgtgtccgcc
gcgggatgttccggctgtggaaaatgtgattgcagtggagtaaaagggcaaaagggagaa
agaggcttgccgggacttcagggtgtgattgggtttcctggaatgcaaggacctgaaggt
ccccctggggcaccagggcttaagggtgatactggagaaccaggactgccaggaacaaag
ggaacaagaggccccccaggagtatcaggcttcccaggaaacccaggccttcctggcatt
ccaggacaagatggccctcctggtccgcctggcattccgggatgtaatggcacaaagggt
gaaagaggtccagtaggtcccccaggtttaccaggactgactggaagtataggacctcca
ggacctcctggaatgaagggagatccaggtgacgtgattggtcttgtaagtcctggtgtg
ctaaaaggtgaaaaaggatttcctggacaacctggactgcctggtccacccggagcttca
gggtttcagggaccaatgggaccaatgggtcctccaggagagccaggtcccccagggcca
ccaggacttccaggcgagaagggctacatgggcttgggctttcagggtcccaaaggtgaa
aagggagaacaaggagtaagaggccccccaggacccccaggaccagcacctcatatgaaa
gaaaaagggagtgaaatcataaagggagaaaagggcgatccaggtgaaaagggcgaaaag
ggaattccaggggtgccaggttcaggtttcaaaggagacaggggtgaccctgggcagcct
ggtccacgtggcaagcctggaaaagatggtgaaccaggactgaaaggagaacctggtttg
ccaggaggatttgggattccaggacgacctggggagcctggcacaaagggtgacaaaggg
gagcgaggttatccaggacctccaggaagaatgatagatgctggaccaatagataccttt
ggtgaaaaaggagaccctggagtttcaggtttgcctggactgaaaggtcaaaaaggtgaa
aaaggcttccctggtgcacaaggaatcccaggacctccaggtcgaccagttccagatagg
gtaggatcgcctggtgtccctggagagagaggtgaaaaaggtgaaaagggttctcctggc
ttcccttcacctggaagccctggaagagatggtttcccaggtccccctgggttgcctggc
ccaccaggacctccaggcaaaacagatggaattgatcagtgccagcagggagaacctggt
gcaccaggtagtcctggacttccagggagagatggatttccaggagagatgggagagaaa
ggtgaaaaaggtgaagcctgtaccttgtgtgataaagtaggacctcctggacttccagga
cctcaagggccgccaggtccatcaggttttccaggacaagcaggtttcaagggtgacaga
ggcttacctggacttgatggccttccaggggtgcctggtccccctggcactccaggactt
ataggcagccctgggccaaaaggagaacctggagattttacttacgattctatcctgaaa
ggcgaaaagggagatcctggtttcccaggacaaccaggcactcctggaagagaaggaaga
ccaggaaaagatggatttccaggtccccagggtccaaaaggaacaccgggtacagctggc
ttgaaaggagaacgtggtccccctggccaacctggattccctggagtgcgtggtgaaaga
ggttttcctggccctcctgggataggtgctgcaggattacctggtgaaaaaggagacaga
ggctttgctggaaccccaggtttaccaggacttccaggagcaaagggtgaagcaggacga
actatatcgctccctggacctcctggggcagatggccttcctgggccacctggtttccct
ggaccccaaggtgacaaagggaatcctgggcttccaggtagacctggcctaccaggagaa
aaaggtgctgttgggcagccaggtatagggttccctggacctccaggtcccaaaggtttc
caaggtcagcctggctcacctggtcagccaggaaccccaggaacccctggtctggatggt
ttgccaggagttccgggtttacaaggccaaaagggtgaacctggtgtaggtctacctggc
cctaagggattgccagggccccctggcccagctggcatccctggagaaaagggaagtcca
ggactgcctggtttacgtggtgagcagggctttccgggcatacctggacagcagggattc
agaggtgaccctggtctcccaggtctccaaggcttgcagggccctccaggtgcaccaggg
ctgggccctccaggattgccaggacccgctgggcagccaggaccccagggaccaccaggt
tttcctggagtaaaaggagaaaggggcttccctggtgtcccaggtctagatatgccagga
cctaaaggggataaaggtagcccgggccagccaggagtcccaggctctgtggggttacct
ggcctgccaggtccacagggggctgttggactgaaaggatcaacaggacccaaaggagaa
atgggagttatgggaactcctggattgccaggaactcctggaccagttggagatcgaggg
tttcctggtgaaaaaggtagccaaggtttcaaaggtgtaattggaccacagggtgatcct
ggtgttaagggagataaaggtgaagctggtctcccaggaaaacctggaacaatagacaac
atggacatggttagcctcaaaggccagaagggagatcaaggagaaaaaggggaccatgga
gcaacaggagaaaaagggctacgtggggattatggagaaccaggaattccagggagagat
ggtgaacccggtactccaggacaaccaggaccaaaaggtgatcaaggccccccagggtac
ccaggggatccaggagttccaggacaaaaaggatcggttggtgaaatgggtctgccagga
acacctggagaaaagggtcttcctggagtaccaggtgcaccaggcacaccagggttccct
gggcaaaaaggtgaaaaaggagacaaaggagcaccaggttttcctggaattggctttcca
ggggctcctggtgagaagggagaaccaggaagaacgggtagtccaggtttatctggagat
aagggtgaaaagggtagtgcaggaattcctggaatgccgggtgccccaggtcccaaagga
tcccctggcatggcaggatttccaggaagccctggccgccatggagaaaagggtgaaaaa
ggacttcctggcttaagtggaattccaggtttaaaaggagaaccaggtgaacctggtgtt
ccgggtcctgctggtgccatcggtcagaagggtgagccaggttatgatgggattccaggt
gcagctggtgcaaagggtgaacaaggtcttccaggtagaggacttccaggatttcctggt
gcaaagggagacaaaggtgcaaaaggtgaagtgggttttccaggatccccaggaagtcca
ggcatcccaggcctgaaaggggaaccaggatatgcaggtccaccaggccctaaagggagc
caaggtcttcccgggctaccaggaagtgcaattgaaggccctaaaggagacagaggaccc
caaggccaacctggtcttccaggtttaccaggtccaacagggccaccaggacctccaggt
ctgaaaggggccaaaggagagcaagggagcaatggctggccagggactcctgggggtcca
ggaatgaaaggtgatccaggtttccaaggactgccaggtagtcctggtttgccaggagat
gttggtccaaagggtgatctcggacctccaggagttccaggtgttccaggtccaaaagga
actcctggcttcccaggccttaagggtgagcgaggtgaccaaggtcttcctggatctaaa
ggtttacaaggcccaccaggcccaccaggtccttttcagcttattaaaggggatcctggc
ttacctggacctgtaggaccagttggtctcaaaggattcccaggacttccaggtcccaaa
ggacaacaaggggtgacaggaccttcaggtgtacctggaccacctggtagtccagggttt
gatggtcaacctgggcagaaaggagaagctggtccttttggtcccccagggcccagagga
tttccaggtccacctggccctgatggcttgcctggggctatgggcccaccaggggcacca
tctgttgctcatggcttccttgttaccagacatagtcaaaccattgaagagccatcgtgt
ccgtttggaacaaggctgatttaccacggctactccttgctttatgtacaaggcaatgaa
agagcacatggccaggatctgggcacagcaggaagctgtcttcggaaatttagtaccatg
cctttcttattctgcaatatcaacaacgtctgtaattttgcatcaaggaatgactactct
tactggctgtctactcctgagcccatgccaatgaatatggctcctatcactggtgataac
atcagaccattcatcagcagatgctctgtgtgtgaagctcctgctatggtaatagctgtt
cacagtcaaacaattcaaataccaccatgtcctgagggctggagctcactttggattggt
tactcctttgtcatgcacaccagtgctggtgccgagggctctggccaggccctagcctcc
cctggttcctgcctagaggagttccgcagcgctcccttcattgaatgccatggccggggc
acctgcaattactatgcaaatgcttacagcttctggcttgccactatagaaaggaatgag
atgttcaggaaaccgactccctcaaccttgaaagccggggatctacgctcaaatgttagc
cgttgtcaagtctgtatgaggaaaacataa
DBGET
integrated database retrieval system
