Onychostruthus taczanowskii (white-rumped snowfinch): 121344966
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Entry
121344966 CDS
T07590
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121344966 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otc00536
]
121344966 (COL11A1)
Glycosaminoglycan binding proteins [BR:
otc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121344966 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_1
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
121344966
NCBI-ProteinID:
XP_041277343
LinkDB
All DBs
Position
Unknown
AA seq
1819 aa
AA seq
DB search
MEMQRWSTRWKTRRWPWDSAVTVLITFAFLLRAAEVRGAEPVDVLKALEFHNSPEGVTRT
AGFCTNRRNSKGSDVAYRVSKTAQLSAPTKQLYPGGSFPEDFSILMTVKPKKGIQSFLLS
IYNEQGIQQVGVEVGRSPVFLFEDQNGKPPPEDYPLFRTVNIADGKWHRVAISVEKKSVT
MIVDCNKKTTKPLDRSDKTVVDTNGITVFGTRILDEEVFEGEIQQLLIIADPRAAFDYCE
HYSPDCDSPVPNAAQAQDPRVDEKKKAMVKKKKRTVAASSKDKLQKATTKKTEKYASKKK
KSYQAPTKDKLGVKANVIDGFQDYSIAENDYGPQTEAPSRATEANEQNPVEEVFAEEYVT
GEDYDKKTEATEYGSRGVDLSESDLLVDGDLGEYDFYEYKEYEEKPTDSTNEEFGPGVPA
ETDITETSVTGHGAYGEKGQKGEPAVIEPGMLIEGPPGPRGPAGLTGPPGLQGPVGPPGD
PGERGPPGRPGLPGADGLAGPPGTMLMLPFRFGGDGEKGPTISAQEAQAQAILQQARIAM
RGPPGPMGLTGRPGPVGGPGAAGAKGESGEPGPQGPRGVQGAPGPSGKAGKRGRPGADGA
RGMPGEPGAKGDRGFDGLPGLPGDKGNRGDRGPQGPPGLPGEDGSRGEDGEVGPRGLPGE
AGPRGLLGPRGTPGPPGQPGIAGIDGPSGPKGNMGPQGEPGPPGQQGIPGPQGLPGPQGP
IGPPGEKGPQGKPGLPGLPGSDGPPGHPGKEGQSGDKGALGPPGPQGPIGYPGPRGVKGA
DGVRGLKGSKGEKGEDGFPGFKGDMGLKGDRGEIGQPGPRGEDGPEGPKGRAGPSGDPGA
AGPAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLHGKPGPRGQRGPTGP
RGSRGPRGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH
PGQRGETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGA
KGDPGPQGIPGKDGPAGLRGFPGERGLPGAQGPAGLKGGEGPQGPPGPMGSPGERGAAGT
AGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGIQGPVGLPGPAGPSGSPGEDGD
KGEIGEPGQKGSKGDKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKGDEGP
RGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGS
VGGVGEKGEPGEAGNPGPPGESGTAGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGN
PGPVGFPGDPGPPGEPGPAGQDGVGGEKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGA
TGAEGRQGEKGAKGEPGAEGAPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAPGQ
DGPPGPLGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGAKGD
AGISGPAGPLGPPGPPGLPGPQGPKGSKGSSGPAGQKGDSGLPGPPGPPGPPGEVIQPLP
IQSPKKTRRSPDYMLSDAGDNILDYSDGMEEIFGSLNSLKQDIEHMKFPMGTQNNPARTC
KDLQLCHPDFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSEGVRISSWPKEN
PGSWFSEFKRGKLLSYLDVEGNSINMVQMTFLKLLSASARQNFTYNCHQSVAWHDAPSDS
YDKALRFLGSNDEEMSYDNNPYIKALHDGCASRKGYAKTVLEINTPKIDQVPIVDVMIND
FGDQNQKFGFEVGPVCFLG
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagagatggtccacaaggtggaaaacgagaaggtggccctgggactcggct
gtaaccgtgctcatcaccttcgctttccttcttcgggctgcagaggtcagaggagctgag
cccgtcgatgtgctaaaagcattagaatttcacaattctccagaaggagtaacaagaaca
gcaggattttgcacaaacagaaggaattcaaaaggatcggatgttgcttacagggtctca
aaaactgcacagctgagtgccccaacaaagcagctgtacccaggtggaagttttccagaa
gatttttcaatattaatgacagtaaagcctaaaaagggtattcagtctttccttttgtct
atctacaatgaacaaggaattcagcaagtaggtgttgaagttggtaggtcccctgtcttc
ctgtttgaagatcaaaatggaaaacctcccccagaagactatcctcttttcagaacagtc
aacatcgctgatggcaagtggcatcgagtagctatcagtgtggagaaaaagagtgttaca
atgattgttgactgtaacaaaaaaactacaaaaccacttgacagaagtgataaaacagtt
gtggacaccaatggcatcactgtgtttggaaccaggattctggatgaagaagtttttgag
ggtgagatccagcagctgttgattatagctgatcccagagctgcatttgactactgtgag
cattatagcccagactgtgactccccagtgcccaatgctgctcaggctcaagatcctcga
gttgatgagaaaaagaaagccatggtcaaaaagaagaagaggacagtggccgctagctca
aaggacaaacttcaaaaggccacaacaaaaaaaactgaaaaatatgcatccaagaagaag
aaaagttatcaagcaccaacaaaagacaaactaggggtaaaggccaacgttattgatgga
tttcaagattatagcatagctgaaaatgactatgggccccagacagaagctccctccaga
gctactgaagcaaatgagcaaaatcctgttgaagaagtatttgctgaagaatacgtaact
ggagaggattatgataaaaaaactgaggcaactgaatatggaagcagaggagtagacctc
agtgaatctgatctgctggtagatggagatttaggagaatatgatttttatgaatataaa
gaatatgaagagaaaccaactgattccactaatgaggagtttggtccaggtgttcctgca
gagaccgatatcacagaaacaagcgtgacaggacacggggcttatggagaaaaaggccaa
aagggagaaccagctgtgattgaacctggtatgctcattgaaggaccaccgggaccaaga
ggacctgctggtcttacaggtcccccaggtttacaaggtcctgttggtcctccaggtgac
cctggtgaaaggggtccacctggtcgccctggtcttcctggtgctgatggtttagcaggt
cccccaggtaccatgttaatgctaccgttccgctttggtggagatggtgagaagggccca
acaatctcagctcaagaagctcaagcacaagctattcttcagcaagctaggattgctatg
agaggtccacctggtcctatgggactcactggaagaccaggtcctgtgggtggacctgga
gcagcaggtgctaaaggtgaaagtggtgaaccaggacctcagggtcctcgtggtgtccaa
ggtgcccccggtccaagtggaaaagctggcaaaaggggacgtcctggagctgatggtgcc
agaggaatgccaggagaacctggtgcaaagggtgacagaggatttgatggtcttcctggc
ctccctggtgacaaaggtaaccggggagaccgtggcccacagggacctcctggcttacct
ggtgaagatggatcaagaggagaagatggggaagttggaccaagaggtctcccaggtgaa
gctggtccacggggattactgggccccagaggaacacctgggccccctggacaacctggc
attgcaggtattgatggaccttcaggcccaaagggaaacatgggtcctcaaggggaacca
ggacctcctggtcagcaaggaattccaggcccacaagggcttcctggtcctcaaggtcct
attgggcctcctggtgaaaaaggaccacaaggcaagcctggccttcctggccttcctggt
tctgatggaccacctggtcaccctggcaaagagggtcagtctggagataaaggtgcattg
ggacctccaggtcctcagggtccaattggatacccaggtcctcgtggtgtaaagggtgct
gatggtgtacgtggactcaagggatccaaaggtgaaaagggtgaagatggttttccagga
tttaaaggtgacatgggtcttaaaggtgaccggggagaaattggtcagccaggtccacga
ggagaagatggcccagaaggtccaaaaggtcgggcaggtccatctggggatccaggtgct
gctggtccagctggggaaaagggcaagcttggtgtacctggactgccaggatatccagga
agacaaggtccaaagggctcaacgggtttcccaggatttccaggtgccaatggagagaaa
ggtgcaagggggttgcatggcaaaccaggccccagaggacagcgaggaccaacaggtcca
agaggctcaagaggtcccagaggtcccactggtaaaccaggtccaaagggcacttcaggc
aatgatggtcctcctggcccaccaggcgaaaggggaccacaagggcctcagggacctgtt
ggattccctggaccaaaaggacctccaggtccacctggaaaagatggcttgcctgggcac
ccaggacagcggggtgagactggttttcaaggaaaaactggtcctcctggtcctggtggt
gttgttggccctcagggtcctactggtgagactggaccaattggtgaaagaggccatcca
ggtcctcctggtcccccaggtgaacaagggctcccaggtgctgcaggaaaagaaggtgct
aagggtgatccaggccctcaaggcattcctgggaaagatggaccagcaggtcttcgtggt
ttccctggagagagaggccttccaggtgctcagggtccagctggtctgaaaggaggagaa
ggcccacagggtccacctggcccaatgggctcgccgggagagcgcggagccgcgggcacc
gctggccccattgggctgccgggccggcccggcccccagggacccccaggccctgccgga
gagaagggtgctcctggtgaaaaaggtccccaaggtccagctggacgtgatggaatacag
ggtcctgtaggacttcctggtcctgctggtcctagtggttctcctggagaagatggtgac
aagggtgaaattggtgaaccaggtcagaaaggtagtaaaggtgacaaaggagaaaatggt
cctccgggtccaccaggtctgcagggtcctgttggagccccagggatagctggaggtgat
ggagagccaggcccaagaggtcagcaagggatgtttgggcaaaaaggtgatgaaggtcct
cgaggcttccctggacccccaggcccgattggcttacagggtctgcctggcccaccaggt
gaaaaaggtgaaaatggagatgtgggcccaatgggtccacctggcccaccaggtcccaga
ggtccccagggtcctaatggagcggatggtcctcaaggtcccccaggctcagtcggctct
gttggaggtgtgggtgaaaagggtgagcctggagaagctggtaaccctggacctcctgga
gaatctggaacagctggtccaaaaggtgaaaggggagaaaaaggtgaagctggtccacct
ggagcagccggaccaccaggtgctaaaggacctccaggtgatgatgggcctaagggtaac
ccaggcccagttggttttcctggagatcctggtccccctggggaacctggtccagctggt
caggatggtgttggtggagagaagggtgaagatggtgatcctggtcaacctggtccacca
ggtccttcaggtgaagctggcccacctggtcctcctgggaaaagaggacctccaggagca
acaggtgctgaaggcagacaaggcgaaaaaggtgcaaagggtgaacctggtgcagaaggg
gctcctggaaagacagggccagttgggccacagggacctgcagggaaacctggcccagag
ggtctccggggcattcctggccctgtgggagaacaaggtctgcctggagcaccaggtcag
gatggccctcctggacctctgggcccacctggcttgcctggactgaaaggagacccaggt
tccaaaggagagaagggacatcctggtttgattggcctgattggacctccaggagaacag
ggtgaaaagggtgatcggggtcttcccggcccacagggatctcctggagccaagggtgat
gcaggaatttctggtcctgctggtccccttggaccccctggtcctcctggattacctggt
ccccagggtcccaaaggttccaaaggatccagtggtcctgctggtcagaagggtgacagt
ggcttacctggtccacctggtcctccaggccctccaggtgaggtaatccagccactgcca
attcagtcacccaagaagacaagaagatctccggactatatgttatctgatgctggtgat
aatattctggattattccgatggcatggaggagatctttggctccctgaattccctgaag
caggacattgagcacatgaagtttcccatgggcactcagaataacccagcccggacctgc
aaagatctgcagctctgccaccccgacttcccagacggggaatattggattgatcctaac
cagggctgttctggagactccttcaaagtatactgcaatttcacagcaggtggggaaact
tgcatctacccagataagaaatctgaaggagttagaatctcatcgtggccaaaggagaac
ccaggatcttggtttagtgaatttaagcgaggcaaacttctttcctatttggatgttgaa
ggcaattccattaatatggtccaaatgacattccttaaactactgagtgcctctgccaga
caaaatttcacttacaactgtcaccagtctgtagcctggcacgatgcaccctctgacagc
tatgacaaagcactaaggttcttaggatccaatgatgaagaaatgtcttatgacaacaat
ccttacatcaaagctctccacgatggctgcgcatcaagaaagggctatgcaaagacggtg
ctggaaatcaacacgcccaaaatagaccaagtgcccatagttgatgtgatgatcaatgac
tttggtgatcagaaccagaagtttggatttgaggttggtcctgtctgcttccttggttaa
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integrated database retrieval system
