Onychostruthus taczanowskii (white-rumped snowfinch): 121346332
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Entry
121346332 CDS
T07590
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6
KO
K08737
DNA mismatch repair protein MSH6
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Pathway
otc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
121346332 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otc03400
]
121346332 (MSH6)
DNA repair and recombination proteins [BR:
otc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
121346332 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
HVO_0758
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
121346332
NCBI-ProteinID:
XP_041279983
LinkDB
All DBs
Position
Unknown
AA seq
1350 aa
AA seq
DB search
MSRQSTLLRFFSKAAPPASPAGSEPRSEPRRSRASGERNGLQAAGSPPGGAGRAAARRGE
NGEKGAGGGAAAKAPSVSCEYAPGDLVWAKMEGYPWWPCLIYNHPTERTIVRGKGKSTRV
HVQFFDDSPTRGWISVKYLKPYKGSSDGETMKGGMFYSTKPEIKRAMVLADDAMSKDKTK
RLELAVCNEPSDTEEEEEEIEEMSENASGNSEDCNSEEDVKSNKRVMSRERAVKAKRRRV
LDSDSDHDGSDVEFKPDGKDAASSEEASSGVDENESSDTETESVAESPVKVPSKRKRREV
KKPAKRSSLGNECSETPKRAATVSSEAKSKLTSFAAPESFESQANACSGGTGGFSVWEHE
KLDWLQEGKRRDAHRRRQGDPDYDPCTLYVPEDYLNKCTPGVRRWWQLKSQNFDAVICYK
VGKFYELYHMDAVTGVNELGLIFMKGTWAHSGFPETAFGRFSDVLVQKGYKVARVEQTET
PEMMEARCKSTGHSSRFDKVVRREICRIITKGTQTYSVMDCDPSENNSKFLLCVKEKEDS
AGTRVYGVCFVDTSMGKFHVGQFPDDRHCSRFRTLVAHYTPVQVLFEKGNLSVDTQKILK
GSLVSCIQEGLTSGSQFWNASKTLKVLLEEGYFKEKQNSENGCSLPSVIKSLTSESDSLG
LTPGENSELALSALGGCVFYLKKCLIDQELLSQANFEEYVPVDIATVKTMSSSSLFSRTG
QRMVLDGVTLMNLEVLQNGTNGSTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPKSIND
RLDAVEDLLAVPDKMSEVSEYLKKLPDLERLLSKIHSIGSPLKSQNHPDSRAIFYEELKY
SKKKIADFLSTLEGFKVMNEIVEFMEEFADDFKSRVLKQLVTRKAKNPDGRFPDLSAELT
RWDTAFDHNQARKTGVITPKLGFDPDYDGALEDIRALEEDLRKYLDKQRKLLGSRYVQYW
GTGKNRYQMEIPESVISRNLPEEYELRSSRKGYKRYWTKEIEKMLAAMVNAEERRDAALK
DCMRRLFYNFDKNSKDWQTAVECIAVLDVLMSLAHYSQGGDGPLCRPVIVLPTDNAPPFL
ELRNSRHPCITKTFFGDDFIPNDIVIGIKDEGSSSEASCVLVTGPNMGGKSTLMRQAGLL
VVMAQLGCYVPAEACRLTPIDRVFTRLGASDRIMAGESTFFVELSETSSILQHATEHSLV
LVDELGRGTATFDGTAIASAVVEELAERIRCRTLFSTHYHSLVEDYSHCGAVRLGHMACM
VENESEDPSQETITFLYKFIEGACPKSYGFNAARLADIPEEVIQKGHRKAKEFEKTTISL
RIFRYLCQVVDGAACDANAVRKLTAMIDRL
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccagagcaccctgctccgcttcttctccaaggccgccccgccggcctcgccg
gctggcagcgagccccgcagcgagccccgccgcagccgcgcctcgggggagcggaatggc
ctccaggctgccggcagccccccgggcggagcgggccgagcggcggcgcggcgcggcgag
aacggcgagaagggcgcggggggcggcgcggccgccaaggcccccagtgtctcctgtgag
tatgctcctggggacttggtgtgggccaagatggaaggctatccctggtggccatgtctc
atatacaaccaccccactgaaagaacaatagtcagaggaaaaggaaaatccactcgtgtc
cacgtgcagttctttgatgacagccctacaaggggttggatcagtgtcaaatacctgaag
ccatataaaggttcatcagatggggagacgatgaagggaggtatgttttacagcacaaag
cctgaaattaaaagagccatggtgctggcagatgatgccatgagcaaagataaaaccaag
aggcttgagctagcagtatgcaatgagccttcagacacagaggaggaagaggaggaaata
gaggagatgagtgaaaatgcatcaggcaacagtgaggactgcaatagtgaggaggatgtg
aaaagcaataagcgagtgatgagcagggaaagagctgtaaaagccaagagaaggagagtg
ttggattctgacagtgaccacgatggctctgatgtggagttcaagcctgatgggaaagac
gcagcaagcagtgaggaagccagtagtggggtggatgaaaatgagtcttctgacacagag
acagagagtgttgcagagagccccgtaaaagtcccttctaaacgaaagagaagagaggtg
aaaaagcctgctaaaaggagtagcttgggaaatgaatgttctgaaacacccaaaagagca
gcaacagtctcttcagaagccaagtctaagctgacatcctttgcagcacctgaaagtttt
gaatctcaagcaaatgcttgcagtggaggcactggtggcttctcagtgtgggagcatgaa
aagcttgactggctgcaagaagggaagaggagagatgcgcacaggaggcgtcagggtgac
cctgattacgacccctgtactctgtacgtgcctgaggattacctcaacaagtgcacgccg
ggcgtgcggaggtggtggcagctcaaaagccaaaactttgacgctgtgatttgctacaag
gtcggaaagttctatgagttgtatcacatggacgcagtcactggcgtcaatgagctgggc
ctgatctttatgaagggcacctgggcccactcgggttttccagaaactgcgttcggccgg
ttctccgatgtcctggtgcagaagggctacaaggtggcgcgcgtggagcagacggaaacg
cccgaaatgatggaagcacgctgcaagtccacgggccactccagcaggtttgacaaggtg
gtgcgccgggagatctgcaggatcatcaccaagggaacccagacatacagcgtcatggac
tgcgacccctccgagaacaacagcaagttcctgctgtgcgtgaaggagaaggaggactcg
gccggcacgcgcgtctacggagtctgcttcgtcgacacctccatgggcaagttccacgtt
ggccagttcccagacgaccgccactgctccaggtttaggactttggtagctcactacacc
cctgtgcaggtgctgtttgagaagggcaacctgtctgtggacacacagaagatactgaag
ggctcgcttgtttcttgcattcaggaagggctgacctcgggttcccagttctggaatgca
tctaaaacactaaaagtccttcttgaggaaggatatttcaaggagaagcagaattctgaa
aatggatgttctctgccctctgtaatcaaatctctgacttcagagagtgactccctggga
ttaactcctggtgaaaacagtgagttagctttgtcagctcttgggggatgtgtcttctat
ctcaaaaaatgtctgattgatcaggagctgttatcacaggcaaactttgaggaatacgtc
cctgtggatattgctactgtcaaaaccatgagttcaagtagtttgtttagcagaactggc
cagcggatggtgctggatggagtcaccctgatgaacttggaagtcctgcagaatggaacc
aatggaagcacagaaggtactttgttggaaaggattgattcttgctgtacaccatttggg
aagcgactcctgaaacagtggctctgcgctccgctttgtaatcctaaatccatcaatgat
cgtttggatgctgtcgaggacctcttggcagtgccagataaaatgtctgaagtcagtgag
tacctcaagaaactgcctgaccttgaaagactgctcagcaaaattcacagcattgggtca
ccactcaaaagtcagaaccatcctgacagcagggccatcttctatgaagaactcaaatac
agcaaaaaaaaaattgctgactttctgtctaccctggagggattcaaagtcatgaatgaa
attgttgaattcatggaggagtttgccgatgacttcaaatccagagtcctgaagcagctg
gtcacccgcaaagccaaaaatcccgatggccgctttccagacttgagtgcagagctcaca
aggtgggacactgcctttgatcacaaccaggctcggaagacaggagtgattacccccaag
ctgggtttcgaccccgattatgacggagcactagaggatatcagagctctcgaggaggat
cttcggaagtacctggataagcaacgcaagctgctcgggtccagatacgtgcagtactgg
gggacaggcaagaaccggtaccagatggagattccagaaagtgtcatatcccgtaacctg
cccgaggaatacgagctgaggtcgagcaggaagggctacaagcgctactggaccaaggag
atcgagaagatgctggctgccatggtgaacgccgaggagcgccgcgacgccgccctcaag
gactgcatgaggcgcctcttctacaacttcgacaagaacagcaaggactggcagacagct
gtggagtgcattgctgtgctggatgtcttgatgtcccttgctcactacagtcaaggtggt
gatggacctctgtgccgacctgtaatcgtgctgcctacagataatgctcctcccttcctg
gaacttagaaattcccgccatccatgcatcacaaaaactttctttggggatgattttatt
cccaacgacatcgtgataggcatcaaggatgaaggcagcagcagtgaggcctcctgtgtg
ctggtaactggccccaacatgggtggcaaatctacactcatgagacaggctggtctcctg
gtggtcatggcccagctggggtgctacgtgcccgcggaagcctgcaggctcacgcccatc
gaccgcgtgttcacgcggctcggcgcctccgacaggatcatggccggtgaaagtaccttc
tttgttgaattgagcgagacttccagcattctgcagcatgcaacagagcattcccttgtt
ctcgtggatgaactgggcagaggcacggccacgtttgacggaacagccatagcgagcgcg
gtggtggaggagctggccgagaggatccggtgccggacgctgttctccactcactaccac
tccctggtggaggactattcccactgcggggccgtgcgcctgggccacatggcatgcatg
gttgagaatgagagtgaggatccgagccaggaaacaattacgttcttgtacaagttcatt
gaaggagcctgcccaaagagctatggcttcaacgcagcaagacttgcagatattccagag
gaagtcattcagaaggggcacagaaaagccaaagagttcgaaaaaacaaccatctcactg
agaatatttaggtacctgtgccaggtggtggatggagcagcctgtgatgcaaacgcggtt
cggaaactcacggcgatgatcgaccggctttag
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