Ottowia testudinis: J1M35_20270
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Entry
J1M35_20270 CDS
T08188
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
otd
Ottowia testudinis
Brite
KEGG Orthology (KO) [BR:
otd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otd03016
]
J1M35_20270
Enzymes [BR:
otd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
J1M35_20270
Transfer RNA biogenesis [BR:
otd03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
J1M35_20270
Prokaryotic type
tRNA splicing ligases
J1M35_20270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
QTD45317
UniProt:
A0A975H5U4
LinkDB
All DBs
Position
complement(4271625..4272842)
Genome browser
AA seq
405 aa
AA seq
DB search
MNYNEIQNDNALPIKMWTKGVPVEDEAMQQLQNVSRLPIVFKHVAAMPDVHYGIGATVGS
VIPTFKAIIPAAVGVDIGCGMMACKTTLMASDLPDSLGPLRAAIEKAVPHGMSPRRYGRD
KGSWDTPPPETDAAWTQLVDEFEQICEKYPRLKNTNNYKQLGTLGTGNHFIEICLDEAQA
VWVMLHSGSRGVGNAMGTHFIELAKKDAERNNVQLPDKDLAYFEEGSQYFGDYVQGVGWA
QKFARANREVMMLRVIEAMRQVITKPFSTHLEAVNCHHNYVQRETHFGHDVFVTRKGAVS
AKAGELGIIPGSMGAKSYIVRGKGNPDSFMSCSHGAGRKMSRTKAKKLFSIQDQIKATEG
VECRKDADVIDEIPMAYKDIDAVMEAQKDLVEVVYTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgaactacaacgaaatccaaaacgacaacgccctgcccatcaagatgtggacgaaaggc
gtgccggtcgaagacgaagccatgcagcaattgcagaacgtctcgcgcctgcccatcgtg
ttcaagcacgtggccgccatgcccgatgtgcattacggcattggcgccaccgtgggctcg
gttattcccaccttcaaggccatcattccggcggccgtgggcgtggatattggctgcgga
atgatggcgtgcaaaaccacgctgatggcgagcgatttgcccgattcactcggcccgctg
cgcgcggcgattgaaaaagccgtgccgcacggcatgtcgccgcgccgttatgggcgcgac
aagggttcgtgggacacaccgccgcctgaaaccgatgccgcgtggacgcaactggtggat
gaattcgagcagatttgcgagaaatacccgcgcctgaaaaacaccaacaactacaagcaa
ctgggaacgctggggacgggcaaccacttcatcgaaatctgcctggacgaggcgcaggcg
gtgtgggtgatgctgcactccggctcacgcggcgtgggtaacgccatgggcacgcatttc
attgaattggcgaagaaagacgccgaacgcaacaacgtgcagttgcccgataaagatttg
gcttatttcgaagaaggcagccaatatttcggcgactacgtgcagggcgtgggctgggcg
caaaagtttgcccgcgccaaccgcgaggtgatgatgctgcgcgtgatcgaggccatgcgc
caggtgatcaccaagccgttcagcacgcacctggaagccgtgaattgccaccacaactac
gtgcagcgcgaaacgcatttcgggcacgacgtgttcgtcacgcgcaagggcgcggtgagc
gccaaggcgggcgagctgggcatcatccccggcagcatgggcgccaagagctacatcgtg
cgcgggaaaggcaaccccgacagcttcatgagttgcagccacggcgctggccgaaaaatg
agccgcaccaaggccaagaagctgttcagcatccaagatcagatcaaggccaccgaaggc
gtggaatgccgaaaagacgccgacgtgatcgacgaaatcccgatggcttacaaggacatc
gacgccgtgatggaagcgcaaaaagatctggtggaggtggtgtatacgctgaagcaggtg
gtgtgtgtgaaggggtga
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