Opitutus terrae: Oter_0283
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Entry
Oter_0283 CDS
T00689
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
ote
Opitutus terrae
Pathway
ote03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Oter_0283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ote03019
]
Oter_0283
Messenger RNA biogenesis [BR:
ote03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Oter_0283
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
RNase_Y_N
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
DUF6286
LapA_dom
KH_2
Motif
Other DBs
NCBI-ProteinID:
ACB73573
UniProt:
B1ZQ93
LinkDB
All DBs
Position
complement(316157..317728)
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AA seq
523 aa
AA seq
DB search
MSAADFAFLIAESDLFDWSLTVALVIGGALGFLVVWAFTRHTRRMAHEQAAELEEVARRE
AAVAAEEIRQKAEAEIQEKRAELNRDFDRREIESEVRLREIRAHEESLALLDYQLEQRQE
RLNRETAAMRQARDAIRALSKSVRQRLEGVSQMDAESIRQALREEVQLECQDELRALRRE
IMEKSEQDLQTEGRRIMIAAMQRLASKPNNDLTSTIVSLPNEDMKGRIIGREGRNIKAFE
AATGVTVLIDESPQTVLISSFDPIRREVARGALEALIKDGRIHPATIEEFVKRAHEEIEL
SAMQAGEDAVTRLNINGLHPEIIKLLGKLKFRFSYNQNVLDHSVETASLASMIASEVGLD
PNVAKRAGLLHDIGKAVNADYEGSHAHIGAEFIRRYGETPIVVNSVAAHHEEVKPETVYA
GLVILADTISATRPGARAESMAGYIQRLGRLEKLAMAIDGVQQAFAIQAGREIRVVVSPQ
TVTDDRAREIAKELRKRIEAELQYPSTIKITVIREQRFTETAT
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcagccgacttcgcgtttctgatagccgagagcgacctgttcgattggtcgctc
acggtggcattggtcattggcggggcactgggttttctggtcgtctgggcgttcacgcgg
cacacgcgccggatggcgcatgagcaggcggcggaactcgaagaggtggcgcgccgcgag
gcagccgtggccgcggaggagattcgccagaaagccgaagcggaaattcaggagaaacgc
gccgagctgaaccgcgatttcgaccggcgcgaaatcgagagcgaggtgcggctccgcgaa
atccgcgcgcacgaggaatcgctcgcgctgctcgactaccaactcgagcagcggcaggag
cggctcaaccgcgagaccgcggcgatgcggcaggcgcgcgatgcgatccgggcgctgtcg
aaaagcgtgcggcagcggctcgagggcgtgtcgcagatggacgccgagtcgatccgccag
gcgctgcgcgaggaggtgcagctcgaatgccaggacgaactccgcgcactgcgacgcgag
atcatggagaagtccgagcaggacctgcagaccgaaggccgccgaatcatgatcgccgcg
atgcagcggctcgccagcaagccgaacaacgacctgacgtcgaccatcgtgtcgctgccg
aacgaggacatgaaaggccggatcatcggccgcgaagggcgcaacatcaaagcgttcgag
gcggcgacgggcgtgaccgtgctcatcgacgagtcgcctcagacggtcttgatttcatcg
ttcgacccgatccggcgcgaagtggcgcgcggggccctggaggcgttgatcaaggacggc
cggattcatcccgcgacgatcgaggagttcgtgaagcgtgcgcacgaggagatcgagctc
tcggcgatgcaggccggcgaggacgcggtgacgcggctcaatatcaacgggctgcacccg
gaaatcatcaagctgctcggcaaactgaaattccgcttctcctacaaccagaacgtgctc
gatcactcggtcgagaccgcgtcgctggcgtcgatgattgcgagcgaggtcgggctcgat
ccgaatgtcgcgaagcgcgcggggctgctgcacgacatcggcaaggcggtgaacgccgac
tacgaaggcagccatgcgcacatcggcgcggaatttatccggcgctatggcgagacgccg
atcgtggtgaattcggttgcggcccatcacgaggaggtgaagccggagacggtttacgcc
gggttggtgattttggccgatacgatctccgccacgcggccgggcgcgcgcgcggaatcg
atggcaggttacatccagcggctcggccggctggaaaaactggcgatggcgatcgacggc
gtgcagcaggcgtttgccattcaggccggccgggagattcgcgtcgtggtgtcgccgcaa
accgtgacggacgatcgggcgcgggagatcgcgaaggagctgcgcaagcggatcgaggcc
gagctgcagtatccgagcacgatcaagatcacggtcatccgcgagcagcggttcacggag
accgcgacctga
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