Opitutus terrae: Oter_3168
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Entry
Oter_3168 CDS
T00689
Name
(GenBank) excinuclease ABC, A subunit
KO
K03701
excinuclease ABC subunit A
Organism
ote
Opitutus terrae
Pathway
ote03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Oter_3168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_3168
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Oter_3168
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Oter_3168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_21
AAA_29
AAA_16
NACHT
DnaJ_CXXCXGXG
nSTAND1
RsgA_GTPase
AAA_33
AAA_22
Zn_ribbon_8
AAA_23
cobW
RlmL_1st
NTPase_1
Viral_helicase1
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
ACB76448
UniProt:
B1ZMZ6
LinkDB
All DBs
Position
4123440..4126439
Genome browser
AA seq
999 aa
AA seq
DB search
MVITGPSGSGKSSLAFDTLYAEGYRKYMESLSTQARQVLEQLRRPDVDFIHGLSPVLAIE
QRTGSGGPRSTIATATELADYAQLLWALCGEQRCPKDGGRVVQRSLDGNVQRVLTECAGE
RIMLLAPAMQAKASVLREELPRLRQRGFQRVRLDGEVRNLDEPKLIPANAGAKLITVDLV
IDRLVANADQRSRLADSLELAFREGKDRAIVLAQKQAAGRVASVAGVVDPGPGSASPATT
SASAPAEWREIPLSQSLACEVCGDVFERLTPKHFSFNHSEGACPTCGGLGRKMRFVPELI
VPDPEKSVREGAIKPWRIGGKNLIIKHNALLKQLAEQLPFDPDVPWRSLSEETRRAVLHG
AGERQFAFKLRRMREPKTMPFAGVIADLEESWRHTDSEGFRARLTTFMVAGECPECHGTR
LNARSGAVRLNLGSEPAPSGTGVPPVDSGSASDDHGRDARATTSPLSFPEFNALDIEAAH
EFARRLDIEAAHEFARRAVATYGDNDAVREVVTGIEQRLHFLAETGLGYLTLDRDYATLS
GGEAQRVRLATQLGMGLMGVIYVLDEPSIGLHPHDNQKLLDTLVALRDRGNTVIVVEHDE
ETMRLADELIELGPEAGVEGGRVLFQGSPADCMKLSAKVSRTGPYLARTMGVTKDAATKQ
PDGAWLTVREARENNLRGIDARFPVGLLTCVTGVSGSGKSTLVNDILAAAAARKLNGAKT
LPGKHRAIENLDFFEKLVRVDQEPIGRSPRSNPATYVDLLGLLRDLFAQMPLAKIRGYKA
SRFSFNVRGGRCERCQGDGVIKLDMQFLADAYAPCPSCGGRRFNRETLEVLFHGKSIADV
LDLTVREAMSLFRNIPRVMDKLTTLDAVGLGYLTLGQSATTLSGGEAQRIKLSLELSKRQ
QGHTLYILDEPTTGLHWVDIQKLMDLLFKLRDAGNTVIVIEHNLDVINLADWIIDLGPGG
GRAGGDVVFAGPRTEIELKAPSLTGAALRRWRAAGKTGG
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
gtggtgatcaccggtcccagcggctcgggcaagtcgtcgctggccttcgacacgctctac
gcggagggctaccggaagtacatggagagcctgtcgacgcaggcgcgacaggtgctggag
cagctgcgccggccggacgtggacttcatccacgggctttcgccggtgctggccattgag
cagcggaccggatcgggcgggccgcgcagcaccatcgccacggcgaccgagctggcggat
tatgcccaactgctgtgggcgctgtgcggcgaacagcggtgcccgaaagacggtggccgc
gtcgtgcagcgctcgctcgacggcaatgtgcagcgcgtgttgacggaatgcgccggcgag
cggatcatgctgctcgcgcccgcgatgcaggcgaaggccagcgtgttgcgcgaggaattg
ccgcggctgcggcagcgggggtttcagcgcgtgcgactcgacggcgaggtgcgcaatctg
gatgaaccgaagctgattcccgcgaacgccggcgcgaagttgatcacggtcgacctcgtg
atcgaccggctggtcgcgaatgccgaccagcggagccggctggcggattcgctcgagctg
gcgtttcgcgagggcaaggaccgtgcgatcgtgctcgcccagaaacaagcggccggccgc
gtggccagtgtagccggggtcgttgaccccggcccgggctcggcgagcccggctacaaca
tcggcgtcggcgccggcggagtggcgggagattcccctcagccagtcgctcgcctgcgag
gtctgtggcgacgtgttcgagcggctgacgccgaagcacttttcgttcaaccacagcgaa
ggcgcctgcccgacgtgcggcggcctcggccgaaagatgcgtttcgtccccgaactgatc
gtgcccgatccggagaagagcgtccgcgaaggtgcgatcaaaccgtggcggatcggggga
aaaaatctcatcatcaaacacaacgcgttgctgaagcagctcgccgagcaactgccgttc
gacccggacgtgccgtggcgctcactgtcggaagagacgcggcgcgcagtcctgcacggg
gcgggcgagcggcagttcgccttcaagctgcgccggatgcgggaaccgaagaccatgccg
ttcgccggcgtgatcgcggacctggaggaaagctggcggcacaccgacagcgaagggttc
cgggcacggctgacgacgtttatggtggcgggtgagtgtcccgaatgccacggcacgcgg
ctgaacgcgcgcagcggagccgtgcggctgaacctcgggagtgaacctgctccgagtggc
acgggcgtcccgcccgtggactctggatctgcatctgacgatcacggacgagacgcccgt
gccacgacctccccactctcgtttcccgaattcaacgcgctcgatatcgaggcggcgcac
gagttcgcgcgccgcctcgatatcgaggcggcgcacgagttcgcgcgccgcgcggtcgcg
acgtacggcgacaacgacgcggtgcgcgaggtggtcacgggcatcgagcagcggctgcat
tttctggctgagaccgggctgggttatctgacgctcgaccgcgactacgccacgctctcg
ggcggcgaagcacagcgcgtgcggctcgcgacccagctcggcatggggctgatgggcgtg
atctacgtcctggacgagccgagcatcgggctgcatccacacgacaaccagaagctcctc
gatacgctcgtggcgctgcgcgaccgcggcaacacggtgatcgtggtcgagcacgatgag
gagacgatgcggctcgcggacgagttgatcgagctcggccctgaggccggcgtggagggc
ggccgggtgctgttccaaggctcgccggccgactgcatgaaactctccgcgaaggtctcg
cgcaccggcccgtatctcgcccgcacgatgggcgtgacgaaggatgccgccaccaagcag
ccggacggtgcatggctgacggtgcgggaggcgcgcgagaacaacctgcgcggcatcgac
gcgcgtttcccggtcgggttgctgacctgcgtgaccggcgtaagcggctcgggcaagagc
acgctcgtgaacgatattctcgccgccgcggcggcgagaaagctgaacggcgcgaagaca
cttcccggcaagcatcgtgcgatcgagaatctcgatttcttcgaaaagctcgtgcgggtc
gaccaggagccgatcggacgcagcccgcgttcgaacccggcgacgtatgtcgacctgctc
ggactgttgcgggacctgttcgcgcagatgccgctggcgaagattcgcggctacaaggcg
agccggttctcgttcaatgtgcgtggcggccgctgtgagcgctgtcagggcgatggcgtg
atcaagctcgacatgcagttccttgccgacgcctacgctccgtgtccgagctgcggcggc
cggcggttcaaccgcgagacgctcgaggtgctgtttcacggcaagtcgatcgccgacgtg
ctcgacctcaccgtgcgcgaggcgatgtcgctcttccgcaacatcccgcgggtgatggac
aagctcacgacgctcgatgccgtcggtcttggctatctgacgctcggccagtcggcgacg
acgctgtcgggtggcgaggcgcagcgcatcaagctctcgctcgagctgagcaaacggcag
caaggccatacgctctacatcctcgatgagccgacgaccggactgcactgggtcgacatt
cagaagctgatggacctgctgtttaaactccgcgacgccggcaacacggtgatcgtgatc
gaacacaacctcgacgtgatcaaccttgcggactggatcatcgatctcgggccgggcggc
ggccgcgcgggcggggacgtcgtgtttgccggaccgcggacggagatcgagctcaaggca
ccatcgctcaccggcgccgcgctgcgccggtggcgtgcggcgggaaagacgggcgggtag
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integrated database retrieval system
