Opitutus terrae: Oter_3687
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Entry
Oter_3687 CDS
T00689
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ote
Opitutus terrae
Pathway
ote03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Oter_3687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ote03019
]
Oter_3687
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_3687
Enzymes [BR:
ote01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Oter_3687
Messenger RNA biogenesis [BR:
ote03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Oter_3687
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Oter_3687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ACB76964
UniProt:
B1ZXG9
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All DBs
Position
4791316..4793154
Genome browser
AA seq
612 aa
AA seq
DB search
MPLAPDDLDLTLKRTFGYGSFRPLQREIIAATLAGQDVFALLPTGGGKSLCFQLPALVRP
GLTVVVSPLIALMKDQVDALQASGVAATFLNSTLDADESRRRLRGLHQGEFKLLYVAPER
LMLNGWQDNLRAWQIACLAIDEAHCISEWGHDFRPEYRQLAKLRRALPDVPAMALTATAT
TRVRADIIEHLKLREPAVFVASFNRPNLTYRVIPKDQPLKQIIDFVRKREDESGIIYCAS
RAAAERLAESLAGRGFSAKPYHAGLTADERTRHQEEFLRDDARIVCATIAFGMGINKPNV
RWVIHHDLPKNIEGYYQETGRAGRDGLPGDCLLLFSAGDIAKQLHFLDEITDEQEQQIAR
TQLRKIVHYAESAGCRRAELLAYFGETFGVDNCGACDNCLEPRETYDGTLVAQKLLSCVY
RIQQNSGFSVGLNHLIEVLTGADTDKIRRWGHDRLTTYGIGAELSRSQWAAVGRELTRLG
LLTVAEGEYATLALTRDGLTALVQRTPITLTKPMDTPKAKRVSRREGEVACDEILFTRLR
GLRKQLADERRVPAYIVFGDTTLRAMARYYPQSLDAMEGIPGMGEKKRAEFGARFAAEIA
AYLQTNSRQSFG
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttgctcccgatgatctcgacctgacgctgaaacgcacgttcggctacggctcc
ttccgcccgctgcagcgggagatcatcgcggccacgctcgcgggccaggatgtatttgcg
ttgctgccgaccggcggcggcaagtcgctctgcttccaactccccgcgctcgtgcggccg
ggactcaccgtcgtggtttcgccgctgatcgcgttgatgaaggatcaggtcgacgcgctg
caggcgagcggtgtcgccgccacgtttctcaactcgacgctcgacgccgacgaatcgcgc
cgccggctgcgcgggctgcatcagggcgagttcaagctcctctacgtcgcgccggagcgg
ctgatgctcaacggctggcaggacaatctccgtgcgtggcagatcgcctgcctcgcgatc
gacgaggcgcattgcatttccgagtggggccacgatttccgaccggagtaccgccagctc
gcgaagctgcgccgcgcgttgcccgacgtaccggcgatggcgcttaccgccacggccacg
acgcgcgtgcgggccgacatcatcgagcacctgaagctgcgcgagcccgccgtgtttgtc
gccagcttcaaccggccgaatctcacctaccgcgtcattccgaaagaccagccgctgaaa
cagatcatcgacttcgtccgcaagcgcgaggacgagagcgggatcatctactgcgcgagc
cgcgcggcggccgagcggctggccgaatcgctcgccggtcgcggtttctccgccaagccc
tatcacgccgggctcaccgccgacgaacgcacgcgccatcaggaggagtttctccgcgac
gacgcgcggatcgtctgcgccacgatcgcgttcggcatgggcatcaacaaaccgaacgtc
cgctgggtcatccaccacgacctgcccaagaacatcgagggttattatcaggagaccggt
cgcgccggccgcgacggactgccgggcgactgcctgctgctgttcagcgccggcgacatc
gccaagcagctccatttcctcgacgagatcactgacgaacaggaacagcagatcgcgcgc
acgcagctccggaaaatcgtccactacgccgagagcgccggctgccgtcgcgccgagttg
ctggcgtatttcggcgaaaccttcggcgtggacaactgcggcgcgtgcgacaactgcctc
gagccgcgcgaaacctacgacggcacgctcgtcgcgcagaaacttctctcgtgcgtttac
cggattcagcagaatagcggattcagcgtcggcctgaatcacctcatcgaggtgctcacc
ggcgccgacaccgacaagatccgccgctggggccacgaccgactcaccacctatggcatc
ggcgccgagctctcgcgttcgcaatgggctgccgtcgggcgggagctgacgcggctcggc
ctgctcaccgtcgccgagggcgaatacgccacgctcgcactgacacgggacgggctgacg
gcactcgtgcagcgcacgccgatcacgctcacgaagcccatggacacgccgaaagcgaaa
cgcgtcagccggcgcgagggcgaagtcgcatgcgacgaaatccttttcacccggctgcgt
ggtctgcgcaaacaactcgccgacgagcgccgcgtgcccgcctacatcgtttttggcgac
accacgctccgcgcgatggcgcgttactatccgcaatcgctcgacgcgatggagggcatt
cccggcatgggcgagaagaagcgcgccgagtttggcgcgcggttcgccgcggaaatcgcc
gcctacctccagaccaattcgaggcagtcgtttgggtga
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