Opitutus terrae: Oter_3706
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Entry
Oter_3706 CDS
T00689
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ote
Opitutus terrae
Pathway
ote03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Oter_3706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ote03019
]
Oter_3706
03009 Ribosome biogenesis [BR:
ote03009
]
Oter_3706
Enzymes [BR:
ote01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Oter_3706
Messenger RNA biogenesis [BR:
ote03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Oter_3706
Ribosome biogenesis [BR:
ote03009
]
Prokaryotic type
rRNA helicases
Oter_3706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
AAA_22
AAA_30
TANGO6_N
Motif
Other DBs
NCBI-ProteinID:
ACB76981
UniProt:
B1ZXI6
LinkDB
All DBs
Position
complement(4814204..4815988)
Genome browser
AA seq
594 aa
AA seq
DB search
MEKRPFAELGLSPEILRAVDKMGFEEAAPIQAAVIPTVLGGRDVVGVSSTGSGKTVAFAI
PALERVDPKLRAVQVLVLCPTRELAVQVAEEMGHLAQFKRGIMGVPIYGGQSYERQYRAL
AAGSQVVIGTPGRVMDHMERGTLKLGALKLVVLDEADRMLDMGFREDIEKILSAVPVPRQ
LLFFSATMPRPIQELIKRTARDPAWIKIEAVAQNAPQVEQIYFEVDRRSKLEALTRLIDV
HDFRYGIVFCSTKVMVDDLDEHLHARGYAVDRLHGDLSQTQRDRVMDKFRRRGFEFLIAT
DVAARGLDVDDLEVVFNYDLPNDAEDYTHRIGRTGRAGKSGRAFTFVSGQEIYKLQAMVR
WAKLDLRRGRLPSLDEVEEARTNVFFEKIRAALEAKEFKPHDRMIDRLLDQGYASTDICS
ALIHLLQGGSTGTPAAVHESAKASAAAPDWARRKSAPESRTAFPSEAGEIRPSPKASSFA
KPTPDKTADGLPALAGRKKQKYARPPRTGAEPGMSPVVLNVGREHQVTPADIVGKIAGVT
RLAASIVGAIDIHERHTLVDVAENAVPVVIKKLAGIRLKGVALAPVLPTTTGPT
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaacgtccctttgctgaacttgggctgtcgccggagattctccgcgccgtggac
aagatgggtttcgaggaggcggcaccgatccaggccgcggtgattccgaccgtgctcggc
gggcgggacgtcgtcggagtgtcgtcgacgggttcgggaaagacggtggcgtttgcgatt
cccgcactcgagcgcgtggatcccaagcttcgcgcggtgcaggtgctcgtgctctgtccc
acgcgcgaactcgccgtgcaggtggcggaggagatgggccacctcgcgcaattcaagcgt
ggcatcatgggcgtgccgatttacggcgggcaaagctacgagcgacaatatcgagcgctc
gcggccggcagccaggtggtgatcggcacgccgggtcgcgtgatggatcacatggagcgc
ggcacgctgaagctgggcgcgctcaagctggtggtgctcgacgaggccgaccggatgctc
gacatgggtttccgcgaggacatcgagaaaatcctctccgccgtgcccgtgccgcgacag
ctgctgttcttttccgcgacgatgccgcgcccgatccaggagctgatcaagcgcaccgcg
cgcgacccggcatggatcaagatcgaggcggtggcacagaacgcgccgcaggtggagcag
atctatttcgaggtggatcgccgttcgaagctcgaggcgctgacacggctcatcgacgtg
cacgatttccgctatggcatcgtcttctgcagcacgaaggtgatggtcgacgatctcgac
gagcatctgcatgcgcgcggatacgcggtcgaccggttgcacggtgacctgtcgcaaacc
caacgcgatcgggtgatggataaattccgccggcgcggcttcgagttcctgatcgccacc
gacgtcgcggcgcgcgggctcgacgtcgacgatctcgaggtggtgttcaactacgacctg
ccgaacgacgcggaagactacacgcaccggatcggccggaccggacgggcgggcaagtcc
gggcgcgcgttcaccttcgtgtcggggcaggagatctacaaactgcaggcgatggtccgc
tgggcgaagctcgatctccggcgcggccggctgccctcgctcgacgaagtcgaggaggcg
cgcaccaacgtgttcttcgaaaaaatccgggcggcgctcgaggcgaaggagttcaagccg
catgaccggatgatcgaccggttgctcgaccaggggtatgcgagcaccgacatctgctcg
gcgctgattcatctgctgcagggtgggagcacggggacgccggcggctgttcacgaaagc
gcgaaagcttccgcggcggcgccggactgggcccgaaggaaatctgcgccggagagccgg
acggcgttcccatccgaagcgggcgagatccggccttcgcccaaggcttcctccttcgcc
aagcccacgccggacaagacagcggacgggctgcccgcgctcgcggggcgcaaaaagcaa
aaatacgcgcgaccgccgcggaccggggcggagcccggcatgtcgccggtggttctcaac
gtggggcgcgagcatcaggtcacgccggcggacatcgtcggcaagatcgcgggggtgacg
cgcctcgcggcgagcatcgtgggcgcgatcgacattcacgagcggcacacgctggtggac
gtggcggagaacgccgtgccggtcgtgatcaagaagctcgccgggatccggctcaagggc
gtggcgcttgcgccggtgctgccgacgacgacgggcccgacgtga
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