KEGG   Opitutus terrae: Oter_4627
Entry
Oter_4627         CDS       T00689                                 
Name
(GenBank) helicase, RecD/TraA family
  KO
K03581  exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]
Organism
ote  Opitutus terrae
Pathway
ote03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ote00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    Oter_4627
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ote03400]
    Oter_4627
Enzymes [BR:ote01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.5  exodeoxyribonuclease V
     Oter_4627
DNA repair and recombination proteins [BR:ote03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     Oter_4627
SSDB
Motif
Pfam: AAA_19 AAA_30 HHH_RecD2 OB_YrrC UvrD_C_2 SH3_13 AAA_11 HHH_5 Viral_helicase1 AAA_22 PIF1 Helicase_RecD SLFN-g3_helicase AAA_16 nSTAND3 AAA AAA_28 T2SSE AAA_29 UvrD-helicase NPHP3_N NTPase_1 AAA_18 RsgA_GTPase TrwB_AAD_bind DEAD MobB TsaE AAA_3 Mg_chelatase AAA_5 MeaB ATP_bind_1 NACHT Thymidylate_kin DO-GTPase1 ABC_tran Zeta_toxin AAA_17 KTI12 cobW ORC-CDC6-like UvrD_C
Other DBs
NCBI-ProteinID: ACB77897
UniProt: B2A0E3
LinkDB
Position
5943338..5945953
AA seq 871 aa
MGVPPMSSYRGHFSPFRSRARRPCHRLRPRSALPFGVAPGIPSLSAVASSPAATLTGVVE
RIIFLNEENHYTIAEFRPDADKKSVPKERPEPVTIVGPLPGVECGETLHLTGEWTRHAQH
GAQFKVLGFKSELPSSVYGIRKYLGSGLVPGIGKVYANKIVDAFGTDTFRILSEESGRLR
DVDGIGRKRATAIKAAWDAKRTERELYIFLQTYGVTPGQCVKIAKHFGPSAKNILTQEPY
RAAREIDGIGFKTADRIAINLGFANDAAPRLDAGLIFALETLQEEGHTAFGESDLCDYAA
NLLETDSRLICARIDALVEAKQLVRHGGSGVAGVVDPGHGDVTPSSRPARRDEGVAAPSA
SGRVSVAAVADRGPGSTSPATPNRTSGSQLSALSSRLIQLPHNDRAEQKIAEVVQRLTRV
ASGLPPIKTDAAVTWAEQKAGFTFHELQRRAVRAALTSKFSILTGGPGTGKTTILRALVE
ILKAKKVRVHLAAPTGRAAQRLAETTGGYASTIHRLLKWDPAAGGFIANESTPLSTDFLI
VDEASMLDTRLASALLQAVPARAHLLLVGDIDQLPSVGAGNVLKDLIVVAEGSAPHPQLS
TLNSQPAALRAAIPVTRLSVVYRQKDHSGIVSTAHAINSGDASLPPAFGEIADVPPWSDL
AFITAADAEDCLRKVIQLCTEFVPQKLHWPNPIADVQVLAPMHKGVAGVANLNVQLQAAL
NPHARGLRAATGEYRPADKVIQLRNNYDKNLFNGDIGSVVSVDAEHGTMVAEFDGEQHTF
ERGDFSDLALAYTISIHKSQGSEYPVVVIPLLKGHFMMLQRNLIYTAITRGRKKVYLVGE
PAAYAMAVRNSESKQRLTHLREKIVVSSSRA
NT seq 2616 nt   +upstreamnt  +downstreamnt
atgggcgtcccgcccatgtcgagttaccgcgggcatttttccccgttccgttcacgggcg
agacgcccgtgccaccgccttcggccgcgttccgcgcttcccttcggtgtggcgcccggt
attccgtcactatccgccgtggcttcctctcccgcagcaactctcaccggcgtcgtcgag
cgcattatcttcctcaacgaggagaatcactacacgatcgcggagttccggccggacgcg
gacaaaaagtccgtgccgaaggaacgcccggaaccggtgacgatcgtcggtccactgccg
ggcgtcgagtgcggcgaaacgctgcatctcaccggcgagtggacgcgccacgcgcagcac
ggcgcgcagttcaaggtcctcggcttcaagagcgagctaccgtccagcgtctatggcatc
cggaaatacctcggcagcggactcgtgcccggcatcggcaaggtctacgccaacaagatc
gtcgacgcgttcggcaccgacacgtttcgcatcctgagcgaagagtccggccggctgcgg
gatgtcgacggcatcggccgcaaacgcgcaaccgcgatcaaggcggcgtgggatgcgaag
cggaccgagcgcgagctctacatttttctgcagacctacggagtgacgcccggccagtgc
gtgaagatcgcaaagcacttcggcccgtccgcgaaaaacatcctcacgcaggaaccgtat
cgcgccgctcgcgagatcgacggcatcggcttcaagaccgccgaccggatcgcgatcaat
ctcggcttcgccaacgacgccgcgccgcggctcgacgccggattgatcttcgcgctcgaa
acactgcaggaggaaggccacaccgcattcggcgaatcggacctttgcgactacgccgcg
aatttgttggagacggactcgcgactgatctgcgcccggatcgacgctctggtcgaagca
aagcaactcgtccgccatggcggctcaggtgtagccggggtcgttgaccccggccatgga
gacgtgacgccctcgtcgcgtcccgcccgccgcgacgagggcgtcgcggctccatctgct
agcggccgcgtcagtgtcgccgcggtcgccgaccgcggcccgggctcaacgagcccggct
acacccaaccgcacttctggctctcagctctcagctctcagctctagactcattcagctc
ccgcacaacgatcgcgccgaacagaagatcgccgaagtcgtgcagcgtctgacgcgcgtt
gccagcggcctgccgccgatcaagaccgacgcggcggtcacttgggctgagcagaaagcc
ggcttcacattccacgagctgcagcgccgcgccgtgcgcgccgcgctcacgagcaagttc
agcattctcaccggcggacccggcacgggcaaaaccaccatcctgcgcgcactcgtggaa
attctgaaggcgaagaaagtccgcgtgcacctcgcggcgcccacgggtcgcgccgcgcag
cgactcgcggaaaccacgggcggctacgcctcgaccatccaccggctgctcaaatgggat
cccgccgcgggcggtttcatcgcgaacgaaagcacgccactttccaccgatttcctgatc
gtcgacgaagcctcgatgctcgacacgcggctcgcttccgcgctgttacaggcggtgccc
gcgcgcgcgcacctgctactcgtcggcgacatcgaccaactcccaagcgtcggcgccggc
aacgtgctgaaggacctgatcgtcgtggccgaaggctccgcgccgcatcctcaactctca
accctcaactctcaacccgcggcgctccgcgccgcgattcccgtcacccggctctccgtc
gtctatcgccagaaggaccacagcggcatcgtcagcacggcgcacgcgatcaactccggc
gacgcctcgctgccacccgcgttcggcgagatcgccgacgtcccgccgtggagcgatctc
gcgttcatcaccgccgccgacgcggaggactgcctccgcaaagtcatccagctctgcacc
gagttcgtcccccagaaactccactggccgaatccgatcgccgacgtgcaggtgctcgcg
ccgatgcacaagggcgtcgccggcgtcgccaaccttaacgtgcagctgcaggccgcgctg
aatccgcacgcccgcggcctgcgcgccgcgaccggcgaataccgaccggccgacaaggtc
attcagctccgcaacaactacgacaaaaacctcttcaacggcgatatcggttcggtcgtg
tcggtcgacgccgagcacggcacaatggtggcggagttcgacggcgagcaacacacgttc
gaacgcggcgacttcagcgatctcgccctcgcctacacgatcagcatccataaatcgcaa
ggcagcgagtatcccgtcgtcgtgatccctctgttgaagggccacttcatgatgctgcag
cggaatctgatctacacggcgatcacgcggggccgcaaaaaggtctacctcgtcggtgaa
cccgccgcgtacgccatggccgtccgcaacagcgaatcgaagcaacggctgacccacctg
cgggagaagatcgtcgtgagcagcagccgcgcctga

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