Ornithodoros turicata (relapsing fever tick): 135368285
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Entry
135368285 CDS
T11155
Name
(RefSeq) ATP-dependent RNA helicase DDX39A isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
oti Ornithodoros turicata (relapsing fever tick)
Pathway
oti03013
Nucleocytoplasmic transport
oti03015
mRNA surveillance pathway
oti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135368285
09122 Translation
03013 Nucleocytoplasmic transport
135368285
03015 mRNA surveillance pathway
135368285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oti03019
]
135368285
03041 Spliceosome [BR:
oti03041
]
135368285
Enzymes [BR:
oti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
135368285
Messenger RNA biogenesis [BR:
oti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
135368285
Spliceosome [BR:
oti03041
]
Complex C
Other components
EJC/TREX
135368285
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
135368285
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
135368285
NCBI-ProteinID:
XP_064457529
LinkDB
All DBs
Position
9:complement(18626600..18640357)
Genome browser
AA seq
465 aa
AA seq
DB search
MPIFAPLCYKTLTNKRSIFLPSKYYYIFIGNSGTLYVSLASSQKMADTDLLDYEDEEEQE
QNAGEPLAEVKKPTGGYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILG
MDILCQAKSGMGKTAVFVLATLQQLDPIDGQVSVLVMCHTRELAFQISKEYERFSKYLPA
VRVGVFFGGLNISNDEKLLKNNCPHVVVGTPGRILALVRSRKLLLKNIKHFILDECDKML
EQLDMRRDVQEIFRSTPHEKQVMMFSATLSKEIRPVCLKFMQDPMEVYVDDEAKLTLHGL
QQYYVKLKDNEKNRKLFELLDLLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRAMT
QEERLARYQQFKDFHKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG
TKGLAVTFVSDETDAKILNEVQDRFDVNISELPDEIDISSYIEGR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcctatttttgcgccgttatgttacaagacgctgactaataagcgcagcatattcctt
ccgtcgaaatattattatatttttattggaaacagtgggacgctctacgtttcgttagca
agcagtcaaaaaatggcggacacagatcttttggactatgaagatgaggaggaacaagaa
cagaacgcaggggaacccctggctgaagttaagaaacccactggtggctacgtgtcaatc
cacagctccggttttcgggatttcttgctgaagccagagctgctacgagccatagtggac
tgcggctttgagcacccttctgaagtgcaacatgaatgcattcctcaagctattctgggc
atggacatcctgtgccaggccaagtctggcatgggcaagacagctgtctttgtgttggca
accttgcagcagctagatcccattgatgggcaggtctctgtcctcgttatgtgccacaca
cgtgagctggccttccagatatcgaaggagtacgagcgattctccaagtacttgcccgca
gtacgggtgggggtattctttgggggactcaatatcagtaacgacgagaagctgctgaag
aacaactgccctcacgttgtcgtgggcactcccggtcgtattctggccctggtccgttcc
agaaaactgctgctcaagaacatcaagcacttcatccttgacgagtgcgacaagatgctc
gagcagcttgacatgcggagagatgtacaggagatattccgcagcacgccccacgagaaa
caggtcatgatgttcagcgctacgctgagcaaggagatccggcccgtctgcctcaagttt
atgcaagaccccatggaggtctacgtggacgatgaagcaaagctgacgctgcacggattg
cagcagtactacgtgaagctgaaggacaacgagaagaaccgcaagctcttcgagctgctc
gaccttctcgagttcaaccaggtcgtcatcttcgtcaagtccgtgcagcggtgcatggcc
ctcgcccagctgctggtggagcagaacttccctgccatcgccatccacagggccatgacg
caggaggagcggctggcgcgctaccagcagttcaaggacttccacaagcgcatcctggtg
gccaccaacttgtttggacgcggcatggacatcgagcgggtcaacatagtcttcaactac
gacatgcccgaggactccgacacatacttacatagggtagcacgagcgggaaggtttggt
accaaaggtttggccgtcacgtttgtctccgacgagacggacgcaaagatcctcaacgag
gttcaagaccgcttcgacgtgaacatctccgagctcccggatgaaatcgacatctcatct
tacattgaggggcgctaa
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