Ornithodoros turicata (relapsing fever tick): 135370043
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Entry
135370043 CDS
T11155
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
oti Ornithodoros turicata (relapsing fever tick)
Pathway
oti03013
Nucleocytoplasmic transport
oti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oti00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135370043
03015 mRNA surveillance pathway
135370043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oti03019
]
135370043
Enzymes [BR:
oti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135370043
5.6.2.5 RNA 5'-3' helicase
135370043
Messenger RNA biogenesis [BR:
oti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135370043
mRNA cycle factors
Common to processing body (P body) and stress granule
135370043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
Helicase_RecD
DEAD
AAA_16
nSTAND3
SRP54
ATPase
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
135370043
NCBI-ProteinID:
XP_064459789
UniProt:
A0A2R5LL81
LinkDB
All DBs
Position
10:35465612..35476572
Genome browser
AA seq
1109 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEGADLLGADTQGSEFDFTDFTLPSQTQASQLENASTHGTRG
QLHTGELSSNGLDVTAAGQALGELTFEEDEEDQFYTKDLPEYACKYCGIHDPGCVVQCNI
CKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNVFLLGFIPA
KADSVVVLLCRHPCAAQSSLKETSWDPDQWKPLIQDRSFLPWLVRVPQERDQLRARQVSA
QQMSRLEELWKDNLDASFQDLDKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYDKK
LKESQTQDNIEVRWDIGLNKKMIAYFTIAKSDTDMRLMHGDELRLRYLGELHKPWSGVGH
VIKIPDNYSEEVGIEMKTNLGVPSECTSHFVVDFVWKSTSFDRMQAALRKFAVDESSVSA
YIYHRLLGHEVEDVVIRCALPKHFSAPHLPELNRSQVYAVKHSLQRPLSLIQGPPGTGKT
VTSATIVYHLVKQNNGPVLVCAPSNIAVDQLTEKIHQTSLKVVRLCAKSREAINSPVSFL
ALHNQIRNMEGHSELHKLQQLKDETGELSSSDEKRYRMLKKTCEKELLEAADVICCTCVG
AGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLALVGDHCQLGPVVMCKKAARAG
LSQSLFERLVVLGIRPLRLEVQYRMHPQLSKFPSNFFYEGSLQNGVFADERRMHGVDFPW
PQPDKPMLFYACQGQEEIAGSGTSYLNRTEAALVEKIATRFLKSSVKPEQIGVITPYEGQ
RAYLVQHMQYQGSLHAKLYQDIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFLNDPRRL
NVALTRARYGIIIVGNPKVLSKQPLWNHLLTFYKENKVLVEGPLNNLKESVIQFSKPRKL
INTVNPGGHFMHTTMFDAREAMIPGSVYDRSSHLNGNAAWPVMKETYPADAAFLSRAHDP
LSYIGPERSQGPMANLPVPIGMFMNMAHIPPRFYNQHQQALQAARQRNRGNGRRPATNKR
FSRGPQNGPSQHLLSQPGFNSQEGFSQPSGGGLSQMSQGCLSQLSQESSSYLAEELRSQA
EGMLSQDSTYQGDRHYLGCLAPAPFSQPY
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggacgcatacggtcctagttcgcagacattgacgttcctcgatacagaagag
ggggcagatcttctgggcgctgatactcaaggttcagagtttgatttcactgacttcacg
ttaccatctcaaactcaagcctcccaactcgaaaacgcttcaacgcacggaacgagaggc
cagctacacaccggagagctttcgtccaatgggttggatgtgacggctgctggtcaggcc
cttggagagctcacctttgaggaggatgaggaggatcaattctacactaaagacttgcct
gaatatgcttgcaagtactgtggaattcatgaccctggctgtgtggtgcaatgtaacatc
tgcaaacggtggttttgcaatggcagaggaaacacttctggcagccacatggtgaaccac
ctggtgcgggcaaagcataaagaggtgactctccatcgggacggtcccctgggggagact
gtgctggaatgttactcgtgtgcctgccggaacgtcttcctcttgggcttcattccagcc
aaggctgactctgtggtggttcttctatgtcgtcacccatgtgctgcccagtcttctctc
aaagagaccagctgggatccggaccagtggaagccactgatccaggatcgttcattcctt
ccgtggctagtgcgtgtcccccaggagagggaccaattgagagctcgccaggtgtctgct
caacagatgagtcgcctggaagagctctggaaggacaacctggatgcctcttttcaggac
ttggacaagccaggtgtggatgaagaaccgcaacaggttctcctcaggtacgaggacggt
tatcagtaccagaacatatttggtccccttgtgaagatggaagcagattatgacaagaag
ttgaaggagtctcagacacaggacaatattgaagtgcgatgggacattggtctcaacaag
aagatgattgcctacttcaccatcgcaaagtctgacacagatatgcgcctcatgcacggt
gacgaacttcgccttcgttacttgggcgagctccacaagccatggtccggtgtaggccac
gtcatcaaaattccagacaattacagcgaagaagtaggaattgagatgaagaccaacctg
ggtgtgccatccgaatgcacctcccactttgttgtagactttgtgtggaaatcaacgtcc
ttcgaccgaatgcaggcagccctgcgcaagtttgccgtggacgaatcatctgtctcggcc
tacatctaccaccgtctcttgggccatgaggtggaggacgtggtgattcgttgtgccctc
cccaagcacttttcggccccccatctgcccgagctaaaccgctcccaagtttacgcagtg
aagcactccctacagcgacccctttccctaattcaggggccacctggcacaggcaagaca
gtgacgtctgctaccatagtgtaccaccttgtgaaacagaacaacggtccagtactcgtt
tgtgctcccagcaacatcgctgtggatcaactgacggagaagatccatcaaaccagtctc
aaggttgtgcgactttgtgccaaaagccgcgaagccatcaactcccccgtgtcgtttcta
gcgctgcacaatcagatcaggaatatggaaggccattccgagcttcacaagcttcagcag
ctgaaggatgaaactggagaactgtcctcatcagacgagaagcgttaccgcatgctcaag
aagacctgcgaaaaggagctgctagaggcggcagacgttatctgttgcacctgcgtggga
gctggagatcctcgtctggcacggttcaagtttcactctatcctcatagatgagagcatg
caggccacggagccagagtgcatggttccagttgtgcttggagcaaagcaattagccctg
gttggtgaccactgtcaactaggtccagtggtcatgtgcaagaaggcagcccgtgctggt
ctatctcagtccctgtttgaacgactcgtggtcctgggcattcggccgctgcggctggaa
gtgcagtaccgcatgcacccacagctgagcaagttcccttcaaacttcttctacgaggga
tcactacagaacggggtgtttgcggatgaacggcgcatgcacggtgtggactttccctgg
cctcagccggacaagcccatgctgttctatgcctgtcaaggccaagaagagatcgcaggc
agcggaacttcttaccttaacaggactgaggctgcgttggtggagaagattgcgacgcgt
ttcctcaagagttcagtgaagccagaacaaataggcgtcatcaccccttatgagggccag
agggcatacttggtgcagcacatgcagtaccagggttctctgcatgccaagctgtaccag
gacattgaggtggcaagtgtggatgcctttcaaggcagggagaaagacctcatagttatg
tcctgcgtgcgttcaaacgagcaccaaggcatcgggttcctcaacgatccgcgacgcctc
aacgttgcgctcactcgggctaggtacggcatcatcatcgtgggaaatcccaaggtgctc
tctaagcaacccttgtggaaccacctgctgacattctacaaagagaacaaggttctggtt
gaagggccactcaacaacctcaaggagagtgtcattcagttcagcaagccacgcaagctc
atcaatactgtgaacccgggtggccacttcatgcacacaaccatgtttgatgcgagggag
gccatgattcccggaagtgtgtacgatcgctcctctcacctcaacggaaatgcagcgtgg
cccgtcatgaaagaaacgtaccctgcggacgctgccttcttgagtagggcccacgaccct
ctgtcatacataggccccgaacggtcccagggccctatggccaacctacccgttcccatt
ggaatgttcatgaacatggctcacatacctcctcgtttttacaaccagcaccaacaagcc
cttcaagcagccaggcagcgcaacaggggcaatggtcgcaggccagctacaaacaagcgt
ttcagtcgaggtccccagaatggtccttctcagcatttgctctctcaaccagggtttaac
agtcaggaagggttctctcaacccagtggagggggcttatctcagatgtcccagggttgc
ctgtctcaactgtctcaggagagcagcagttacctggcggaagaactacggtcccaggct
gaagggatgctgtctcaagactctacgtatcagggggaccgacactacttgggctgcctg
gcccctgcccctttctcgcagccttactga
DBGET
integrated database retrieval system
