Ornithodoros turicata (relapsing fever tick): 135378034
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Entry
135378034 CDS
T11155
Name
(RefSeq) splicing factor 3B subunit 3-like
KO
K12830
splicing factor 3B subunit 3
Organism
oti Ornithodoros turicata (relapsing fever tick)
Pathway
oti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
oti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
135378034
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
oti03021
]
135378034
03041 Spliceosome [BR:
oti03041
]
135378034
03036 Chromosome and associated proteins [BR:
oti03036
]
135378034
Transcription machinery [BR:
oti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
135378034
Spliceosome [BR:
oti03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
135378034
Complex B
135378034
Complex C
U2 SnRNP specific factors
135378034
Chromosome and associated proteins [BR:
oti03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
135378034
TFTC complex
135378034
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
WDR55
EF_TS
Motif
Other DBs
NCBI-GeneID:
135378034
NCBI-ProteinID:
XP_064466932
LinkDB
All DBs
Position
1:39016690..39032583
Genome browser
AA seq
1219 aa
AA seq
DB search
MYLYNLTLQRATGITHAVHGNFSGTKLQEIAVSRGKILELLRPDPNTGKVYTLYTTEIFG
VIRSMMGFRLTGGSKDYLVIGSDSGRIIILEYNAQKNSFEKVHQETFGKSGCRRIVPGQQ
LAMDPKGRALMVAAVEKQKLVYILNRDAAARLTISSPLEAHKSSTLVYHCVGVDVGFENP
VFACLEMDYEEADGDPTGEAAQNTHQTLTFYELDLGLNHVVRKYSEPLEEHGNFLIAVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSAQHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIKLKYFDTIPVAISMCVLKTGFLFVASEFGNHCLYQ
IARLGEEDEEPEFSSAIPLEEGDTFFFAPRPLRNLLAVEELDSLSPALGCTIADLANEDT
PQLYVACGRGPRSCLRVLRHGLEVSEMAVSELPGNPNAVWTVKRKADEDFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCAQIGDDALVQVYPEGIRHIRADKRVNEWRTPG
KKAIVKCAVNQRQVVIALTGGELVYFEMDPTGQLNEYTDRREMSADIICMSLASVPTGEQ
RSRFLAVGLADSTVRIISLDPSDCLSPLSMQALPATPESLSIVEMGAAESDPSSQGMLYL
NIGLQNGVLLRTVLDQVTGDLSDTRTRYLGSRPVKLFKVRMQGSDAALAMSSRSWLSYYY
QNRFHLTPLSYETLEYASGFSSEQCPEGIVAISTNTLRILALEKLGAVFNQVSTPLEYTP
RKFVVNQDTNHLLIIETDHNAYTEKMKHQRKQQMAEEMVEAAGEGEQELAAEMAAAFLSE
TLPEAVFGSPKAGTGMWASVIRVLSPSDGHTVCKVALEQNEAALSVALVRFASQPDEQYV
VVGVARDLQLNPRICRGGGLLITYRLQIGEDPSVGAAYLERVHSTPVEDAPTALCSFQGR
LLAGIGKCVRLYDLGRKKLLRKCENKYIPNLVVTLQSMGSRVLAGDVQESFFFLRYKRHE
NQLVIFADDSVPRWVTASSILDYDTVAGADKFGNVSIIRLPPSISDEVDEDPTGVKALWD
RGWLGGSSQKAEVISNFHIGETVLSLQKATLIPGGSESLVYTTLSGTVGVLVPFTAHEDH
DFFQHLEMHMRAENPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSLDPSKQKSISEELD
RNPSEVSKKLEDIRTRYAF
NT seq
3660 nt
NT seq
+upstream
nt +downstream
nt
atgtacctttacaacctgacacttcaacgtgccacaggcatcactcatgcagtgcatggg
aatttttccggtacaaaactgcaagaaattgcagtgtcgagggggaagattttggaattg
cttcgtccagatccaaacacgggaaaagtttacacattgtacaccacagagatcttcggt
gttattaggtctatgatgggctttcgcctaactggaggatcaaaagattaccttgtaatt
ggatcagactctggaaggattatcattctagaatacaatgcacaaaaaaattcatttgaa
aaggtgcaccaagaaacctttggcaagagtggatgcagacgaattgtaccaggccagcag
ttggcaatggatcccaagggaagagctctcatggttgctgcagtagagaaacaaaagcta
gtttacatattgaacagagatgctgctgctcgtctcacaatttcatctcccctggaggca
cataagtctagtacccttgtgtaccactgtgtcggcgttgacgtgggtttcgaaaatcca
gtttttgcctgccttgaaatggactatgaggaggcagatggtgaccccactggagaagct
gcccaaaatacacaccaaaccctgacattctatgaacttgatcttggattgaatcatgtc
gttcggaaatatagtgaaccgctggaagagcatggaaacttcttgattgcagttccggga
ggaagtgacggccccagtggtgtccttatttgctctgaaaactacatcacatacaaaaat
tttggagaccaaccggatattcggtgccctattcctaggaggaggaatgacttggacgac
cctgagcgtggcatgatttttgtttgtagtgcacaacacaaaaccaagtccatgttcttc
tttctggctcagactgagcagggagatatcttcaagattaccttagaaactgacgaagac
atggtaacagaaataaaactgaagtactttgacacaattcctgttgcaattagcatgtgt
gtcctgaagactggctttctctttgttgcttcagagttcggcaaccactgcctgtatcaa
attgcccggctgggcgaagaagatgaggagccagagttcagcagtgctatcccccttgaa
gagggagacacattcttttttgccccacgtccactgcgcaacttactggcagtggaagaa
ttagactctctgtcaccagcattagggtgcacaattgctgacctggcgaatgaggacact
ccacagctctatgtggcgtgtggcagaggacctcgctcatgcctgagggtgcttcgtcat
ggtctcgaagtgtctgaaatggctgtatctgaacttccgggtaatcccaatgctgtatgg
actgtcaaaagaaaggcagatgaggattttgacgcatacattatcgtgtccttcgtaaat
gccactttggtgctgtctattggagagacagttgaggaagtcacagattctgggtttttg
ggaaccacaccaactctctcctgtgcgcagattggtgatgatgctcttgttcaagtgtac
ccagaaggcataagacatatacgtgcagacaagagagtcaacgagtggcgtacacctggc
aagaaggccattgtgaaatgtgcagttaaccaacgacaagttgttattgctttgactgga
ggagaacttgtctattttgaaatggatccaactggccaattgaatgagtacacagaccga
cgcgaaatgtccgctgatatcatttgcatgtctctggcaagtgtgcctactggggaacag
aggtcacgtttccttgctgttggactggcagatagtacagttcgtatcatctcattggac
ccttcggactgcttgtctccattgagtatgcaagccttgccggcaacgcctgaatcgctc
tctatagttgaaatgggagctgctgaatcagaccccagtagtcaagggatgctatatctg
aatattggattgcaaaacggagtcctgctgcgtactgttttggaccaagtaactggtgac
ctttctgacactcgaacaaggtacttgggctcacgccctgtgaagctcttcaaagtccgg
atgcaaggcagcgatgcagccctggccatgtctagtcgttcatggctcagctattactac
cagaaccgctttcaccttacgccactgtcctacgaaaccctggagtacgcatctgggttt
tcttctgagcaatgccctgaaggaattgtggcaatttccacaaatacactaagaattctg
gcattagagaagttgggggcagtgttcaaccaagtatctacccctctagaatacacaccc
aggaaatttgttgtgaaccaagacacaaaccatctcctcatcattgagacggatcacaat
gcttacacagagaagatgaaacatcagagaaagcaacaaatggccgaggaaatggtggaa
gcagctggggaaggtgaacaggagttggctgcagaaatggcagctgctttccttagtgaa
acattaccggaagctgtctttggatctccaaaggctggaacagggatgtgggcctcggtt
attagggtactcagtccatctgatggtcacacagtctgcaaagttgcactagagcagaat
gaggccgcattaagtgttgcactagttcggtttgcatctcagcccgatgagcaatatgtg
gtggttggtgttgcccgtgacctgcagctgaacccacgtatatgccgaggaggcggcttg
ctcataacctacaggctacaaattggggaggatccgtcggtgggggcagcctatttggaa
agggtgcatagcacccctgtcgaagatgcccccactgccttgtgctcttttcaagggcgt
ctccttgctggtattggcaagtgtgttcgcctctatgacctaggtcgaaagaagttgctt
cgaaaatgtgaaaacaagtacatccccaatttggtggtaacacttcagagcatgggtagc
cgtgtgttggcaggagatgtccaagaaagctttttcttccttcggtacaaacgccacgag
aaccagctggttatttttgcggatgattctgtgcctcgatgggtcacagcttcgagcata
ctggattatgacactgttgctggtgctgacaagtttggaaatgtctctatcatacgcctg
cctcctagcattagtgacgaggttgacgaagacccaactggagtcaaggccctctgggat
cgaggttggcttggtggctcatcacaaaaagcagaagtgatctccaacttccatattgga
gagactgtgctctctctccaaaaggcaactctcattcctggtggttcagaatctttggta
tatactaccctttctggcacagtaggggtgctggtaccgtttactgcacatgaggatcat
gacttctttcagcacttggaaatgcacatgagggctgaaaacccaccactgtgtggaagg
gatcacttgtcattccgatcttactactttcctgtaaagaatgtgattgatggtgactta
tgcgaacagttcaattctcttgacccttcaaaacaaaagagcatttctgaagaactcgac
aggaatccgagcgaggtttcaaagaaacttgaagacatcaggacacgttacgccttctaa
DBGET
integrated database retrieval system
