Ornithodoros turicata (relapsing fever tick): 135398876
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Entry
135398876 CDS
T11155
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
oti Ornithodoros turicata (relapsing fever tick)
Brite
KEGG Orthology (KO) [BR:
oti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
oti03016
]
135398876
Enzymes [BR:
oti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
135398876
Transfer RNA biogenesis [BR:
oti03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
135398876
Prokaryotic type
tRNA splicing ligases
135398876
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
135398876
NCBI-ProteinID:
XP_064486480
UniProt:
A0A2R5LIC6
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All DBs
Position
6:complement(4533205..4539655)
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AA seq
506 aa
AA seq
DB search
MGVRSYNEELSFLEKVSPVSWKIKKGFVPNMKVEGIFYVNKLLENLMFEELRNSCRPGNI
GGFLPGVKQIGNVAALPGIVGHSIGLPDIHSGYGFAIGNMAAFDMNDPKAIVSPGGVGFD
INCGVRLLRTNLMEKDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLPQLGTLGAGNHYAEIQVVDEIFE
KNNASKMGIERCGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDNIEVNDRQLACAMIK
SQEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYNTTPDDLDMHVIYDVSHNIAKME
QHMVDGKLRTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
NATFGTTCHGAGRALSRAKSRRNISYQDVLDKMSEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHEAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccggagttacaacgaagagctctcgtttcttgagaaggtttctcctgtctcg
tggaaaataaagaagggcttcgtaccgaacatgaaagttgaaggtatcttttatgtcaac
aagctactagaaaatttaatgttcgaagaacttcgcaactcgtgccgtcctggtaacata
ggcggcttcttgcctggtgttaagcaaatcggaaatgtcgctgccctgccaggaattgtt
gggcattccataggacttccagacattcactcgggctatggatttgccattggcaacatg
gcagcctttgacatgaatgaccccaaggctattgtttctcctggcggtgtcggcttcgac
atcaactgcggagtccgacttcttcgaactaatcttatggagaaggacgtccttccgatc
aaagaacaactggctcagagtatgtttgatcatatccctgttggtgtagggtccaaagga
attatccctatgaacgctagggacttagaagaggcactggaaatgggtatggactggtca
ttaagagaaggctacgcatgggcggaagacaaggaacactgcgaagaatatgggcgcatg
ctaaacgctgacccagctaaagtatccatgaaggccaaaaagagaggacttccacagcta
ggtacactcggtgcaggcaaccactacgccgaaatacaagtcgttgacgagatattcgag
aagaacaacgccagcaaaatgggcatcgagcgctgcggccaagtttgcgtcatgattcac
agtggcagtcgaggtttcggccaccaggtggcgacagatgccctggttgccatggaaaag
gccatgaagagagacaacattgaagtgaatgacaggcagcttgcatgtgccatgattaag
tctcaggaaggacaggattacctcaagtcgatggcagcagctgcaaactttgcctgggtc
aatcgtagcagcatgaccttccttagcagacaggcctttgcaaaggcgtacaacacgaca
ccagacgatctagacatgcacgtgatttacgacgtctcgcacaacattgccaagatggag
caacacatggtagatgggaagcttcgcacactcctcgtccatcgcaaggggtcgacgcgc
gcctttccacctcatcaccctctcattcccgttgactatcagttgactggacaaccagtc
ctcatcggtggaaccatgggaacctgcagctatgtcctcacgggaactgaacagggcatg
aacgccacgttcggcaccacgtgccacggtgccggccgtgccctctcgcgggccaagtct
cgtcgcaacatcagctaccaagacgtgctggacaagatgagcgagatggggatctcgatc
cgtgtcgcttccccgaagctggtcatggaggaagctccggaatcttacaagaatgtgacg
gacgttgtgaacacttgccacgaagctgggatcagcaagaaatgcataaagcttagacca
attgctgttatcaagggatga
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