Ornithodoros turicata (relapsing fever tick): 135401215
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Entry
135401215 CDS
T11155
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
oti Ornithodoros turicata (relapsing fever tick)
Pathway
oti03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
oti00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135401215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oti03019
]
135401215
Messenger RNA biogenesis [BR:
oti03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
135401215
U7-dependent histone pre-mRNA processing factors
135401215
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B
DUF8001
Motif
Other DBs
NCBI-GeneID:
135401215
NCBI-ProteinID:
XP_064489553
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Position
7:44574779..44582769
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AA seq
735 aa
AA seq
DB search
MTSIIKLHALSGVHDESPQCYLLQVDEFKFLLDCGWNEFFSLQAVKEMKKCANQIDAVLL
SYPDCNHLGALPYLVGHCELKCPIYATVPVYKMGQMFMYDLFQSRHNMEDFTLFSLDDVD
AAFDKIVQLKYSQTVALKGKGQGLSITPLPGGHMIGGTIWRIVKDGEEDILYAVDFNHKK
ERHLNGCILEQISRPSLLITDAFNATYTQARRRTRDEQLMTNILQTLRNGGNVLVSVDTA
GRVLELAHMLEQLWRNHDSGLMAYSLALLNNVSYNVVEFAKSQVEWMSDKVMRSFEGARN
NPFQFKHLQLCHSLMELSRVQEPKVVLASMPDMECGFSRELFIQWCRSPKNSVILTSRTS
PGTLARDLIENPHQQTLTLKVKQRVRLEGSELEEYMRKEKELAAARQKAEREKEFDASDS
SEESEDDMDIDEKKPTIESIKSEKSKSLGFFKQAKKSYLMFPVKEEKMKWDDYGEVIRAE
DFIIVEKTTQEEEATEVKPENDDVMQDVTEMPTKCLESTVTLDVNASLQYIDFEGRSDGE
SVKKIISMMKPQRVILVHGTLEATEALANYCLTSGAVQGRVFTPKVGEVVDATTESHIYQ
VKLKDSLVSSLQFSRTKNAELAWLDGEIVLEEHLGQTDDIMDTDESRESMYILQPLAANQ
VPTHSTIFINELKLSDFKQVLLRNGIQAEFSGGVLYCNNIVAVRRNETGRINIEGSLCED
YFKVRDILYKQYAII
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgacatctataattaaacttcatgctctctcgggcgttcacgacgagtctccacagtgc
tacttgcttcaagtagatgaattcaagtttctgctggactgcggttggaacgagttcttt
agtttacaagccgtgaaagaaatgaaaaaatgtgccaatcaaattgatgccgttctgctc
tcgtatcccgattgcaaccacttgggtgctcttccctacttggttggacactgtgaacta
aaatgccccatatacgctaccgtgcctgtttacaagatggggcagatgttcatgtacgac
cttttccagtcgaggcacaatatggaggattttactctattttcactggacgatgtcgat
gctgcatttgataaaattgtgcagctcaagtacagccagacagtggcactaaaaggaaaa
gggcagggcttatccatcactccactgcctggtggccacatgattggtggcacaatctgg
cgaatagtgaaagatggcgaggaggacatcctgtacgctgttgatttcaatcacaagaag
gagcggcatctcaacggttgtattctggaacagatatctcgaccctcgctactcatcacg
gatgccttcaatgccacatacacacaggcgcggagacgaacgagagatgagcaactcatg
acaaacatcttacagactctccgaaatgggggtaacgtcctcgtctctgtagacacagct
ggcagagtgctggaactggcacacatgctggaacaactgtggcgtaaccatgactctggc
ctaatggcttactccctagcactgctaaataatgtcagctacaacgtcgtagagtttgcc
aagtctcaggtggagtggatgagtgacaaggtcatgcggtcctttgaaggtgcccggaac
aaccctttccagttcaagcacctgcagctctgtcatagcctgatggagctgtcaagagtt
caggagcctaaggtggtattagccagtatgccagacatggaatgtggcttttcccgggag
ttgttcatacagtggtgtcgtagtccgaagaacagtgtcatcctgacaagtagaactagc
ccaggaacgctggccagggatctgatagaaaatcctcaccagcaaacacttaccctaaaa
gtgaagcaacgtgtgcgtttagaaggttcggaattggaggaatacatgcgtaaggaaaag
gaactggctgctgcacgacaaaaagcggaaagagaaaaggaatttgatgcatccgactcg
agtgaagaaagtgaggatgacatggatattgacgagaagaaacctaccattgagagcatt
aagtctgagaagtccaagtcactagggttcttcaagcaggccaagaaatcctatcttatg
tttccagtgaaagaagagaaaatgaaatgggatgactatggggaagtgatccgtgctgaa
gattttattattgttgaaaagactactcaagaagaggaagcaacagaagtcaagcctgaa
aacgatgacgtcatgcaagatgtgacagaaatgccaacgaaatgcctggaaagtacagtg
accctcgatgtgaacgcttcactgcagtacatagactttgaggggcgatcagatggagag
agtgttaaaaaaattatctccatgatgaagccccagagggtgattctggttcacggaact
ctggaagccaccgaagccctagctaattactgcctcacttcaggtgccgtacaaggcaga
gttttcactcccaaagttggagaggtagtagatgcaacaacagagtcccacatctaccaa
gtgaagctgaaggactctttggtgagctcgctgcagttctctaggacgaagaatgcagag
ctggcatggctcgacggcgaaatcgtcttggaggaacatttagggcagacagacgacatc
atggatacagacgaatcaagagaaagcatgtatatactccagccactcgctgctaatcag
gtccccactcattcaaccatattcatcaacgaactcaagttatcagatttcaagcaggtg
ctgctgcgaaatggcatacaggcagagttttccggcggcgtcctctactgtaataatatt
gttgctgtgagaaggaatgaaactgggaggatcaacatagagggcagcttatgtgaagat
tacttcaaagttcgagatatcttgtataagcaatatgctatcatctag
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