Ottowia oryzae: C6570_01565
Help
Entry
C6570_01565 CDS
T05363
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
otk
Ottowia oryzae
Pathway
otk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C6570_01565 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otk03021
]
C6570_01565 (rpoC)
03400 DNA repair and recombination proteins [BR:
otk03400
]
C6570_01565 (rpoC)
Enzymes [BR:
otk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C6570_01565 (rpoC)
Transcription machinery [BR:
otk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C6570_01565 (rpoC)
DNA repair and recombination proteins [BR:
otk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C6570_01565 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AVO33087
UniProt:
A0A2S0MB98
LinkDB
All DBs
Position
complement(344300..348529)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKGSIMSEDDYDAKRKEYGDEFVARM
GAEGVKELLEAIDLDIEIERLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIATTIKAAKKEVEAGTPVVWDILEEVITEHPVL
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYYTTREKINGKGEGMVFTDVGEIQRALEAGVL
ELTAKITVRLTEWTKDKATGEFVPSTGLVETTAGRALLSEILPKGLPFSVMNKALKKKEI
SRLINASFRKCGLKETVVFADKLLQNGFRLATRAGISIAIDDMLVPPQKAGIIERAESEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDEVSKVMMAQLAKQKTTDRHGKEVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTENDCGTSDGSAMRAIVEGGEVIESLRERILG
RSAAEDLVNPETQEVVIKAGQMLDEDAIDELEAAGIDEVRVRTALTCATRFGICAKCYGR
DLGRGGLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSNGLIGFN
PTMRYVTNSKGELVVISRSGEIVVHDEHGRERERHKVPYGATLTVKADQAIKAGMVLANW
DPLTRPIITEFAGQVKFENVEEGLTAAKQVDEVTGLSTLVVIDPKRRGSAKIVRPQVKLV
DGEGKEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEMTGTISFGKETKGKIRLQITDPEGKVWDELIPKEKNVLVHEGQ
VVNKGESIVDGPADPQDILRLLGMEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENSGDSGYIAGEQVERSEMLDTNDALRAEGKVPATYTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVKDQMDEAERRA
IAEAEEAELAEATAGADDAPAADEGHAAE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgctactcgacctgttcaagcaattcacgcccgatgagcatttcgatgccatc
aagattggcctggcgtcgcctgaaaaaatccggtcctggtccttcggtgaggtcaaaaag
cccgagaccatcaactaccgtacgttcaagcctgagcgcgatggcctgttctgcgccaag
atctttggcccgatcaaggactatgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggtgtcatctgcgaaaagtgcggcgttgaagtcacgcaaaccaaagtgcgccgcgaa
cgcatgggccacatcgacctggctgcgccttgcgcgcacatctggttcctgaagtcgctg
ccttcgcgtctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
tttgaagcctacgtggtgaccgaccccggcatgacgcccctgaaaaagggcagcatcatg
agcgaggacgactacgacgccaagcgcaaggaatacggcgacgaattcgtggcccgcatg
ggtgccgaaggcgtcaaggagctgctggaagcgattgacctcgacatcgagatcgagcgc
ctgcgcggcgacctgaccggctccgaagtcaaggtcaagaaaaacgccaagcgcctgaaa
gtgctggaagcgttcaagaaatccggcatcaagcccgagtggatggtgctggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccgctggacggtggccgtttcgccacg
tcggatctgaacgatctgtaccgccgcgtcattaaccgcaactcgcgtcttcgccgcctg
ctggagctgaaggcgcctgaaatcatcgcgcgcaacgaaaagcgcatgctgcaagaggcg
gtggattcgctgctggacaacggccgtcgcggcaaggcgatgaccggcgccaacaagcgc
gccctgaagtcgctggccgacatgatcaaaggcaagagcggccgcttccgccagaacttg
ctgggcaagcgcgtcgactactcgggccgttcggtcattaccgtgggcccaacgctcaag
ctgcaccagtgcggtctgcctaagctgatggcgttggagctgttcaagcccttcatcttc
gcccgtctcgaagccatgggcatcgcgaccaccatcaaggccgcgaagaaggaagtcgaa
gccggcacgccggtggtgtgggacatcctggaagaggtcatcaccgaacacccggtgctg
ctcaaccgcgcacccacgctgcaccgcttgggcatccaggcgttcgagccgatcctgatc
gaaggcaaggccatccagctgcatccgttggtttgcgctgcgttcaacgccgacttcgac
ggtgaccagatggctgtgcacgtgccgctgtcggtggaagcgcaaatggaagcccgcacg
ctgatgctggcgtccaacaacgtgctgttccccgcttcgggcgaaccgtccatcgtgcct
tctcaagacgtggtgctgggcctgtactacaccacccgcgagaagatcaacggcaaaggc
gaaggcatggtgttcaccgacgtgggcgaaatccagcgtgcgctggaagccggcgtgctg
gaactcaccgccaagatcaccgtgcgcctgaccgagtggaccaaggacaaggcgacgggc
gaattcgtgccctctactggcctggtggaaaccacggctggccgcgcgctgctgtccgag
atcctgcccaagggcctgccgttctcggtgatgaacaaggcgctgaagaagaaggaaatc
tcgcgcctgatcaacgcttcgttccgcaagtgcggcctgaaggaaaccgtggtgttcgca
gacaagctgctgcaaaacggtttccgcctggcgacgcgcgctggcatctcgattgcgatt
gacgacatgctggtgccgccgcagaaggccggcatcatcgagcgcgccgagagcgaggtc
aaagagatcgagcagcagtacgtctcgggcctggtgaccgcgggtgagcgctacaacaag
gtggtggacatctggggcaaggccggtgacgaagtgtcgaaggtcatgatggcccagctg
gccaagcaaaagaccaccgaccgccacggcaaggaagtggatcaggagtcgttcaactcc
atctacatgatggccgactccggcgcccgcggctcggctgcgcagattcgccagctggcc
ggtatgcgtggcctgatggccaagcctgacggctcgatcatcgagacgcccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcatctcgacgcacggtgcgcgtaaa
ggtctggccgatacggcgctgaagaccgccaactcgggttacctgactcgccgtctggtg
gacgtgacgcaggatctggtcgtgaccgagaacgattgcggcaccagcgatggctctgcg
atgcgcgccatcgtcgaaggcggtgaggttatcgaatcgctgcgcgagcgtattctgggc
cgcagtgccgcagaagacttggtcaaccccgagacgcaggaagtcgtcatcaaggcgggc
cagatgctcgacgaagacgccatcgacgagctcgaagccgccggtattgacgaagtgcgc
gtgcgcacggcactgacttgcgccacacgcttcggcatctgcgccaagtgctatggccgc
gacctgggccgtggtggcctggtcaaccagggtgaggctgtgggcgtgatcgccgcgcag
tctatcggcgagccgggtacgcagctgaccatgcggacgttccacatcggcggtgcggct
tcgcgtgcggccgtggcatccagcgtggaagccaagtccaacggcctgatcggtttcaac
ccgaccatgcgctacgtgaccaacagcaagggcgagttggtggtgatttcacgttcgggc
gagatcgtggtgcacgacgagcatggccgtgagcgtgagcgccacaaggtgccttacggc
gccacgttgaccgtgaaggcggatcaggccatcaaggcgggcatggtgctggccaactgg
gatccgctgacgcgacccatcatcaccgagttcgccggtcaggttaagttcgagaacgta
gaagaaggcctgacggcggccaagcaggtggacgaggtcacgggcctgtccacgctggtg
gtgatcgatccgaagcgccgcggctctgccaagatcgtgcgcccgcaggtcaagctggtg
gatggcgagggcaaggaagtgaagattcctggcaccgaccactcggtgacgatcggcttc
caggtcggcgcgctgatccaggtgcgcgacggccaggacgtgggccctggcgaggtgctg
gcgcgtattccggtcgaaggccagaaaacgcgtgacattaccggcggtctgccacgcgtg
gctgagctgttcgaagcccgttcgcccaaggacaagggcatgctggccgagatgaccggc
accatttccttcggcaaggagaccaagggcaagattcgcctgcagatcaccgaccccgaa
ggcaaggtgtgggacgagctgattcccaaggaaaagaacgtgctggtgcacgaaggccag
gtggtcaacaagggcgaaagcatcgtcgacggcccggccgatccgcaggacatcctgcgc
ctgctgggcatggaagagctggcgcgctacatcgtggacgaagtccaggacgtgtaccgc
ctgcagggcgtgaagatcaacgacaagcacattgaggtgatcgttcgccagatgctgcgc
cgtgtcgtggtcgagaactccggcgattccggctacatcgccggcgagcaggtcgagcgc
agcgaaatgctggacaccaacgacgcactgcgcgccgaaggcaaggtgccggctacctac
accaacctgttgctgggtatcaccaaggcttcgctgtccaccgactcgttcatctccgcc
gcttccttccaggaaacgacgcgcgtgctgaccgaagcggccatcatgggcaagcgcgac
gagctgcgtggcctgaaagagaacgtcatcgtcggccgcctgatccctgcaggtaccggc
atggcctatcaccaggcccgcaaggtgaaggaccagatggacgaggccgagcgccgcgcc
atcgccgaagccgaggaagccgagttggccgaagccaccgctggcgccgacgatgcgccc
gccgcggatgagggtcacgcagccgagtaa
DBGET
integrated database retrieval system
