Ottowia oryzae: C6570_05660
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Entry
C6570_05660 CDS
T05363
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
otk
Ottowia oryzae
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
otk03016
]
C6570_05660
Enzymes [BR:
otk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
C6570_05660
Transfer RNA biogenesis [BR:
otk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
C6570_05660
Prokaryotic type
tRNA splicing ligases
C6570_05660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AVO33791
UniProt:
A0A2S0MDF3
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All DBs
Position
1193149..1194366
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AA seq
405 aa
AA seq
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MEPQHIHQDIPGGVPLKMWTHGVPVDNGAIQQLTNAARLPIVFKHIAAMPDVHVGIGATV
GSVIPTRKAIIPAAVGVDIGCGMMACKTTLRAEDLPDNLEPLRAAIERAVPHGRKPGARD
PGAWGKVPGSVNTAWAPLATEFDELCRDYPKLAKANHIQHLGTLGSGNHFIEVCLDEAGA
VWFMLHSGSRGVGNAIGTMFIELAKKDAQRHNAKLPDRDLAYFEEGARYFGDYVRAVGWA
QKFAVVNRELMMKRVLEAAKTVIRKSFQSHIEAVNCHHNYVQQETHFGENVYVTRKGAVS
ARQGQLGIIPGSMGARSYIVRGKGNPESFDSCSHGAGRVYSRGEAKRRFTLEQHRAATEG
VACRKDKDVIDETPAAYKDIDAVMAAQRDLVDVVHTLKQVVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggaacctcaacacattcaccaagacatccccggcggcgtgccgctgaagatgtggacc
cacggcgtgcccgtggacaacggcgccatccagcagctgaccaacgcggcgcgcctgccc
atcgtgttcaagcacattgccgccatgcccgatgtgcacgtcggcattggggccaccgtg
ggctcggtcatccccacacgcaaggccatcatcccggcggccgtgggcgtggacattggc
tgcggcatgatggcctgcaagaccacgctgcgtgccgaagacctgcccgacaacctggag
ccgctgcgcgccgccatcgagcgcgccgtgccccacggccgcaagcccggtgcgcgcgac
ccgggtgcctggggcaaggtgcccggctcggtcaacaccgcgtgggcgccgctggcgacg
gagtttgacgagctttgccgcgactaccccaagctggccaaagccaaccacatccagcac
ctgggcacgctgggcagcggcaaccacttcatcgaggtgtgcctggacgaagcgggcgcc
gtgtggttcatgctgcacagcggatcgcgcggcgtgggcaacgccatcggcacgatgttc
atcgagctggccaagaaggacgcgcagcgccacaacgccaagctgcccgaccgcgacttg
gcctactttgaagaaggcgcgcgctactttggcgactacgtgcgcgccgtgggctgggcg
caaaagtttgcggtagtgaaccgtgagttgatgatgaagcgcgtgctggaggccgccaaa
acggtgatccgcaaatccttccaaagccacatcgaagccgtgaactgccaccataactac
gtgcagcaagaaacgcactttggcgaaaacgtgtacgtcacccgcaagggcgccgtcagc
gcgcgccaggggcagctgggcatcatccccggcagcatgggcgcgcgcagctacatcgtg
cgcggcaaaggcaaccccgaatccttcgacagctgcagccacggcgccggccgcgtctac
agccgtggcgaagccaagcgccgcttcaccctggagcagcaccgcgcggccaccgaaggc
gtggcctgccgcaaggacaaagacgtgatcgacgaaacgccggcggcctacaaggacatt
gacgcggtgatggccgcgcagcgcgacctggtggacgtggtgcacaccttgaagcaggtg
gtttgtgtgaaggggtag
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