Ottowia oryzae: C6570_14095
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Entry
C6570_14095 CDS
T05363
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
otk
Ottowia oryzae
Pathway
otk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6570_14095 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otk03019
]
C6570_14095 (rnr)
03016 Transfer RNA biogenesis [BR:
otk03016
]
C6570_14095 (rnr)
Enzymes [BR:
otk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
C6570_14095 (rnr)
Messenger RNA biogenesis [BR:
otk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
C6570_14095 (rnr)
Transfer RNA biogenesis [BR:
otk03016
]
Prokaryotic type
tRNA degradation factors
C6570_14095 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
UVB_sens_C
Motif
Other DBs
NCBI-ProteinID:
AVO36169
UniProt:
A0A2S0MJW6
LinkDB
All DBs
Position
complement(3090790..3093102)
Genome browser
AA seq
770 aa
AA seq
DB search
MTSIGLEEIEGVVQGHRDGHGFVSPDDGSPDIYLPPNEMRAVLHRDHVKVRVVRHDKRGR
PEGRVVEIVQRPPHPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKQGIGEAKAGEVVVVEL
TEPPALYGQPIGRVREVLGDIDDAGMEIEIAVRKYGVPHEFSAPAMAEARALPDTVRPAD
KAGRVDLTDVPLCTIDGEDARDFDDAVYCEPAVVTGRGKKPNGWRLLVAIADVSHYVKTN
SPIDVDAYDRATSVYFPRRVIPMLPEKLSNGLCSLNPDVDRLCMVCDMLVTANGDVHAYQ
FYPAVMHSHARFTYTEVAAILANTRGPEAAKRKARVKDLENLHDVFRALLKARHARGAVD
FDTVETQIIADESGRIERIEPRTRNDAHRLIEECMLAANVSSADYILGSKHAGLFRVHEG
PTPEKMELLRAYLKALGLGLSISDEPHPSEFQRIAEATKDRPDAEQIHMMLLRSMSQAIY
TPTNSGHFGLGYEAYTHFTSPIRRYPDLLVHRVIKAILQDRKYQLPDLPTPGEAHEKLTR
RLKKQSASRRRDEGAPPKRLSEELLGWEAAGLHCSANERRAEEASRDVESWLKCKYMKEH
LGEVFNGTVTAVTTFGLFVTLNELHVEGLVHITELGGEYFRFDEVRQELRGERTGIRYII
GSKVRVQVSRVDLDGRKIDFRMVSENDELPARPPRDRAGSAAAEGRAGNTAKPAKSAKSA
KAGGRAARPPRADGEGPSRQAMSPIQALKASLKKATGRAKKSSKPRKTRR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
ataaccagcatcgggctggaagaaattgaaggtgtggtgcaagggcaccgcgacgggcac
ggttttgtgtcgccagatgacggttctcccgacatctatttgcccccgaacgagatgcgc
gcggtgttgcaccgcgaccacgttaaggtgcgcgtggtgcgccacgacaagcgcggccgc
cccgagggccgcgtggtggaaatcgtgcagcgcccgccgcacccgatcatcgggcggctg
ttgcacgaaggcggcatctggctggtggcgccggaagacaagcgctacggccaggatgtg
ctgattcccaagcagggcattggcgaggccaaggccggcgaggtggtggtggtcgagctg
accgagccgccggccctgtacggccaacccatcggccgggttcgtgaggtgctgggcgac
atcgacgacgcgggcatggagatcgagatcgccgtgcgcaagtacggcgtgccgcacgag
ttctctgcccccgccatggccgaggcgcgcgcgctgcctgacaccgttcggccggctgat
aaggcgggcagggtcgatctgaccgacgtgccgctgtgcaccatcgacggcgaagacgca
cgcgacttcgacgacgcggtgtattgcgagcccgccgtggtcaccggccggggcaagaag
cccaacggctggcgcctgctggtggccattgccgatgtcagccactacgtcaagacgaac
agcccgatcgacgtggacgcgtacgaccgcgccaccagcgtgtacttcccgcgccgcgtc
atcccgatgctgcctgaaaagctcagcaatggcctgtgttcgctgaaccccgacgttgat
cgcctgtgcatggtgtgcgacatgctggtcacggccaacggtgacgtgcacgcctaccag
ttctacccggcggtgatgcacagccatgcccgcttcacctacaccgaggtggccgcgatc
ctggcgaacacgcgcgggcccgaggcggcgaagcgcaaggcgcgcgtgaaggaccttgag
aacctgcatgacgtgttccgcgccttgctcaaggcgcgccacgcccgcggggcagtggat
ttcgacacggtagagacgcagatcattgcggacgaatcgggccgcatcgagcggatcgag
ccgcgcacccgcaacgacgcgcaccgcctgatcgaagagtgcatgctggccgccaacgtg
tccagcgccgactacatcctgggcagcaagcacgcgggcctgttccgcgtgcacgagggc
cccacgcccgagaagatggagcttttgcgcgcctacctgaaggcgctgggcctgggcctg
tcgatcagcgacgagccgcaccccagcgaattccagcgcatcgccgaagccaccaaggac
cgccccgacgccgagcagatccacatgatgctgttgcgctcgatgagccaggcgatctac
acgcccaccaacagcggccattttggcctggggtatgaggcgtacacgcacttcaccagc
ccgatccggcgctaccccgacctgctggtgcaccgcgtcatcaaggcgatcctgcaggac
cgcaagtaccagctgcccgatctgcccacgcccggcgaggcgcatgagaagctgacccgc
cgcttgaaaaagcagagcgcctcgcgcaggcgggacgagggcgcgccgcccaaacggctc
tctgaagagctgctgggttgggaggccgcaggcctgcactgcagcgccaacgaacgccgc
gccgaagaggccagccgcgacgtcgaatcgtggctgaagtgcaagtacatgaaagagcac
ctcggcgaggtgttcaacggcacggtgacggccgtcaccacgttcgggctgttcgtcacg
ctgaacgagttgcacgtggaagggctggtgcacatcaccgagttgggcggcgagtatttc
cgcttcgacgaagtgcgccaggagctgcgcggcgaacgcaccggcattcgctacatcatc
ggcagcaaggtgcgcgtgcaggtcagccgggtggatctggacggtcgcaagatcgacttc
cgcatggtgtctgaaaacgacgagctgccagcgcgccccccacgcgatcgcgccggcagt
gccgccgccgaaggccgtgcgggcaataccgctaaaccagccaagtcggctaagtcggcc
aaagccggcggccgtgcggcgcgcccgccgcgcgccgatggcgaagggccgtcgcgccag
gcgatgtcgcctatccaggcactcaaggccagcctgaagaaggcgacgggccgcgccaag
aagagcagcaagccgcgcaagacccggcgttga
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