Ottowia oryzae: C6570_15785
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Entry
C6570_15785 CDS
T05363
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
otk
Ottowia oryzae
Pathway
otk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6570_15785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otk03019
]
C6570_15785
Enzymes [BR:
otk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6570_15785
Messenger RNA biogenesis [BR:
otk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6570_15785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AVO36214
UniProt:
A0A2S0MJZ6
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All DBs
Position
3456354..3458228
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AA seq
624 aa
AA seq
DB search
MNFEDLNLAPAILKAVHELGYTAPTPVQAQAIPAVLAGSDLLAGAQTGTGKTAGFTLPVL
QLLSSRAGAKPGCIRALVLTPTRELAAQVEESVRNYGKYLDLSSTVIFGGVGMNPQISRI
RAGCDILVATPGRLLDLAGQGYVDLSNVEILVLDEADRMLDMGFIHDVKKVLALLPKAKQ
SLLFSATFSDEIRDLANGLLKDPQHIQVTPPNTTVERIAQLIYPVGRTRKKEVLAHLIDQ
GSWSQVLVFTRTKYGANNVAEYLTKHGIKAMALHGNKSQSARTQALAEFKSGELRALVAT
DIAARGIDIDELPHVVNYEIPNVPEDYVHRIGRTGRAGASGQAVSLVCMDEEGFMHEIER
FTKQQIPVEILEGFGPAEGEQAEPIAMGRQTLWGGLGKPPGRDVMQAAARAARQDMMQRI
RDNKAAQGGAGRGQGGRGGQSPRNAPASNGARRAPVARTEGDAGDVAQRDDAMAVGADGA
PQGDRANRNRRRRGRGGAGMGGNGGQHGGQGAPRQQNSGVRQSPGLPPTREFGFDDEDDR
DMDRLPRNIDPLQTNLHGRRNAPRGPSHGAAGQPDPMRTSIDMMGKGANRNKGNRSGGNG
GGGGRGNFGGGGGSRNRAGGGFSR
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgaagatctgaacctggcaccggccattctcaaggccgtgcacgagttgggc
tacaccgcccccaccccggtccaggcgcaagccattccggccgtgctggcgggcagcgat
ctgctggccggcgcccagaccggcaccggcaagaccgccggcttcaccctgcccgtgctg
cagctgctcagcagccgcgccggcgccaagcccggctgcatccgcgccctggtgctgacc
cccacgcgcgagctggccgcacaggtcgaagaatcggtgcgtaactacggcaaatacctg
gacctcagctccaccgtcatcttcggcggcgtgggcatgaacccgcagatcagccgcatc
cgcgcgggctgcgacatcctggtggccacgcccggccgcctgctggacctggctggccag
ggctacgtcgacctgtccaacgtcgaaatcctggtgctggatgaagccgaccgcatgctg
gacatgggcttcatccacgacgtgaagaaagtgctggccctgctgcccaaggccaagcaa
agcctgctgttctcggccacgttcagcgacgagatccgcgacctcgccaatggcctgctg
aaagacccgcagcacatccaggtgacgccgcccaacaccaccgtcgagcgcatcgcccag
ctgatctaccccgtgggccgcacgcgcaagaaggaagtgctggcccacctgatcgaccag
ggcagctggagccaggtgctggtgttcacccgcaccaagtacggcgcgaacaacgtggcc
gaatacctgaccaagcacggcatcaaggcgatggcgctgcacggcaacaagagccagagc
gcccgcacgcaggcgctggccgagttcaagagcggcgagctgcgcgcgctggtggccacc
gacatcgccgcccgcggcatcgacatcgatgagctgccgcacgtggtgaactacgaaatc
ccgaacgtgcccgaagactacgtgcaccgcattggccgcaccggccgcgcgggcgccagt
ggccaggccgtcagcctggtgtgcatggatgaagaaggcttcatgcacgagatcgagcgc
ttcaccaagcagcagatcccggtggaaatcctggaaggcttcggcccggccgaaggcgag
caggccgagcctatcgccatgggccgccagacgctgtggggcggcctgggcaagccgccc
ggccgcgacgtgatgcaagcggccgcccgcgctgcgcgccaggacatgatgcagcgcatc
cgcgacaacaaggccgcccagggcggcgctggccgcggccagggcggccgcggcggccaa
agcccgcgcaacgcgccggccagcaacggcgcgcgccgcgcacccgtggcccgcaccgaa
ggtgacgcgggcgacgtagcccagcgcgacgacgccatggccgtgggcgccgacggcgcg
ccgcaaggcgaccgcgccaaccgcaaccgccgccgccgtgggcgcggcggtgcaggcatg
ggcggcaacggcggccagcatggcggccaaggcgcaccgcgccagcagaacagcggcgtg
cgccaatcgcccggcctgccgcccacgcgcgaattcggctttgacgacgaggacgaccgc
gacatggatcgtctgccgcgcaacatcgacccgctgcagaccaacctgcacggccgccgc
aacgcgccgcgtggccccagccacggcgcagccggccagcctgatccgatgcgcaccagc
atcgacatgatgggcaagggggccaaccgcaacaagggcaaccgcagtggtggcaatggc
ggcggtggtggccgtggtaacttcggtggcggcggtggcagccgcaaccgcgccggcggc
ggcttcagccgctga
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