Ottowia oryzae: C6570_17225
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Entry
C6570_17225 CDS
T05363
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
otk
Ottowia oryzae
Pathway
otk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C6570_17225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otk03019
]
C6570_17225
Enzymes [BR:
otk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C6570_17225
Messenger RNA biogenesis [BR:
otk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C6570_17225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AVO35766
UniProt:
A0A2S0MIT3
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All DBs
Position
3769715..3771169
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AA seq
484 aa
AA seq
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MTQPYSTLALAEPLKRAVAEMGYENMTPIQEQAIPVVLAGQDVMGAAQTGTGKTAAFSLP
LLQRLLKHETASVSPARHPVRALVLLPTRELADQVAGQVKQYAKYTNLRSAVVFGGMDMK
PQVEELRKGVEVLVATPGRLLDHIEAKTAVLNQVEYVVLDEADRMLDIGFLPDLQRILNY
LPKQRTTLLFSATFSPEIKRLAASYLQDPVLIEVARPNTTASTVEQHFYLLDDDDKRSAI
RQVLKDKELRQAFVFCNSKLGCARLARALERDGLRTTALHGDKSQDERLKSLEAFKQGEV
DLLVATDVAARGLDIKDVPAVFNYDVPFNPEDYVHRIGRTGRAGASGLAVTLVTKGDQRL
MGELEKLLKTKIEVEHLQFENERPSGRQNDGRRRWQGDETGDARDDVRRQRAERRTSDRP
RPAAAPADPFFDKPYEASPAAEQAPAAWETQARPGRSSVSANIKPKRKVAALFKAPQETP
SAAD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaccctattcaactcttgcgctggctgagccgctcaagcgcgccgtggccgag
atgggctacgagaacatgacgcccatccaggagcaggccattccggtcgtgctggctggc
caggacgtgatgggcgccgcgcagaccggcacgggcaagaccgccgctttttcgctgccg
ctgctgcagcgcctgctcaagcacgagaccgcctcggtatcgcccgcgcgccacccggtg
cgcgcgctggtgctgctgcccacgcgggaattggccgaccaggtggctggccaggtcaag
cagtacgccaaatacaccaacctgcgcagcgccgtcgtctttggcggcatggacatgaag
ccccaggtcgaagagttgcgcaagggcgtcgaggtgctggtggccacgccggggcgcctg
ctggaccacatcgaggccaagaccgcggtgctgaaccaggtcgagtacgtggtgctggac
gaggccgaccgcatgctggacatcggcttcctgcccgatttgcagcgcatcctgaattac
ctgcccaagcagcgcaccaccctgctcttctcggccacgttctcgcccgagatcaaacgc
ctggcggccagctacctgcaagacccggtgctgatcgaggtggcacggccgaacaccacc
gcctccacggtcgagcagcatttctacctgctggacgacgacgacaagcgcagcgccatc
cgccaggtgctgaaagacaaagagctgcgccaggccttcgtgttctgcaacagcaagctg
ggctgcgcccgcctggcccgcgcgctggagcgcgacggcctgcgcaccaccgcgctgcac
ggcgacaaaagccaggacgagcggctgaagtcgctcgaagccttcaagcagggcgaagtc
gatctgctggtggccaccgacgtggccgcgcgcgggctggacatcaaggacgtgcccgcc
gtcttcaactacgacgtgcccttcaaccccgaggactacgtgcaccgcatcggccgcacc
ggccgcgcgggcgcctcgggcctggccgtcaccctggtcaccaagggcgaccagcgcctg
atgggcgagctggaaaagctgctcaagaccaagatcgaagtcgagcacctgcagttcgag
aacgagcgccccagcggccgccagaacgacggccgccgccgctggcagggcgacgaaacc
ggcgatgcgcgcgacgacgtgcgccgccagcgcgccgagcgccgcaccagcgaccgcccc
cggcccgctgccgcgccagccgatccgttcttcgacaagccgtacgaggcttcgcctgcg
gccgaacaagcccccgccgcctgggaaacgcaggcccgccccgggcgcagcagcgtgtcg
gccaacatcaagccgaagcgcaaggtggccgcgctgttcaaggcgccgcaggaaacgccg
tccgcggccgattga
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