Octadecabacter temperatus: OSB_02570
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Entry
OSB_02570 CDS
T04001
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
otm
Octadecabacter temperatus
Pathway
otm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OSB_02570 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
otm03021
]
OSB_02570 (rpoC)
03400 DNA repair and recombination proteins [BR:
otm03400
]
OSB_02570 (rpoC)
Enzymes [BR:
otm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OSB_02570 (rpoC)
Transcription machinery [BR:
otm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OSB_02570 (rpoC)
DNA repair and recombination proteins [BR:
otm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OSB_02570 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
AKS44825
UniProt:
A0A0K0Y1L0
LinkDB
All DBs
Position
233400..237653
Genome browser
AA seq
1417 aa
AA seq
DB search
MNQELTNNPFNPLTPAKTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLAYGALMTEEEFLDAQDAYGMDAFT
ANIGAEAIREMLAAIDLEGEADQLREELKVATGELKPKKIIKRLKIVESFIESGNRPEWM
ILTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYYTTIAREGMKGEGMVFSDIEEVEHAL
ASGEVHLHANIQARIPQIDAEGNEVMQRFETTPGRVRLGSLLPLNNKAPFELVNRLLRKK
EVQQIIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWELVNDTRD
QVKDFEQQYMDGLITQGEKYNKVVDAWSKSNDKVTEAMMTTISTTGRADDGSENEPNSVY
MMAHSGARGSVTQMKQLGGMRGLMAKPNGEIIETPIISNFKEGLTVLEYFNSTHGARKGL
SDTALKTANSGYLTRRLVDVAQDCIVREVDCGTEMAITAEAAVNDGEVISSLSERVLGRV
SADDVLKPGTDEVLVKAGELIDERTADMIEVAGVAKMRIRSPLTCEAEDGVCAMCYGRDL
SRGTRVNIGEAVGIIAAQSIGEPGTQLTMRTFHIGGVAQGGQQSFLESSVDGVVELRNAQ
ILENEFGEQVVMGRNMVLAIMDENGEERANHKVGYGSKVFVKDGAKIARGDKMFEWDPYT
LPIIAEKAGTVKFVDLVNGIAIREDTDDATGMTQKIVTDWRSAPKGNELKPEILIIGADG
EPVRNDAGNPVTYPMSVDAVLSIEDGQQIAAGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAENDGYVRFGKDYKNKRRIAIENADDPDTKVEYMVPKGKHIPVQEGDFVQ
KGDYIMDGNPAPHDILAIMGVEALADYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWE
VSDSGETTLLKGENVDKAEFDEANAKAVARGGRPAQGEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVTRIATERDNVVIQARRE
EAEAAAALAAPEAMADDVVGGDAFDTIIEGNTESRDE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaactgacaaacaacccgtttaacccgctcacaccggcgaaaacgttcgac
gaaatcaaggtctctttggcctctccagaacggatcctttcgtggtcctttggtgagatc
aaaaagccggaaaccatcaactaccgtacgttcaagcctgagcgtgatggccttttctgc
gcacgtatctttggcccaatcaaagactacgaatgtctctgcggcaaatataagcgcatg
aagtatcgcggcgttgtctgcgaaaaatgtggtgttgaagttacgctgcaaaaggtacgc
cgtgagcgtatgggccacatcgagctggctgcgcctgttgcgcacatctggttcctgaag
tccctgccatcccgcatcggcctgatgctggacatgactttgcgtgaccttgagcgcatc
ttgtacttcgaaaactacgttgtgatcgaaccgggtcttacagacctcgcatacggtgcc
ctgatgaccgaggaagaattcctcgacgcacaagacgcctacggcatggacgcgttcaca
gcgaacatcggtgctgaagcgatccgcgaaatgctggctgcaatcgacctcgaaggcgaa
gctgaccagctgcgcgaagagcttaaggttgcgactggcgaattgaagccaaagaagatc
atcaagcgtttgaagatcgttgaaagcttcatcgagtccggtaaccgtcctgaatggatg
atcctgactgttgtgcctgtgatcccgccagaactgcgcccactggtgccgctggatggt
ggtcgtttcgcaacgtctgacctcaacgatctgtaccgtcgtgtgatcaaccgaaacaac
cgtcttaagcgtctgatcgaactgcgcgcacctgacatcatcgtacgcaacgaaaagcgt
atgttgcaggaatctgtggatgcgttgttcgacaacggccgtcgtggtcgcgtgatcact
ggcgccaacaagcgtccgttgaaatcactgtctgacatgctgaagggtaagcaaggtcgc
ttccgtcaaaaccttttgggtaagcgcgtcgacttctctggtcgttcggtcattgtgacc
ggtccggaactgaagttgcaccagtgtggtttgcccaaaaagatggcgctcgaactgttc
aaaccgttcatctactcccgcctcgaagcgaagggtctgtcttccacagtgaagcaagcc
aagaagctcgttgaaaaagagcgtcctgaagtttgggacatcttggacgaagtgatccgt
gagcaccctgtcatgctgaaccgtgcgcctacgttgcaccgtcttggtattcaggcgttc
gaaccggttctgatcgaaggtaaggctatccagctgcacccgctcgtatgttctgcgttt
aacgctgacttcgacggtgaccaaatggctgttcacgtgccgctgtcccttgaggcacag
cttgaagcacgcgttctgatgatgtccacgaacaacgttctgtcgcctgccaacggcgcg
ccgattatcgttccttcacaggatatgattttgggtctgtactacacgacaatcgcgcgt
gaaggcatgaagggtgaaggcatggtcttctccgacatcgaagaagttgaacacgctttg
gcatcaggtgaagttcacctacacgctaacattcaagcccgtattccgcagatcgatgcg
gaagggaatgaagtcatgcagcgctttgaaacgaccccaggtcgtgttcgcctaggttca
cttttgccattgaacaacaaagcaccgtttgaactcgtgaaccgtcttttgcgtaagaaa
gaagttcagcagatcattgatacggtctaccgttactgtggtcagaaagagtccgtcatc
ttctgtgaccagatcatgaccatgggcttccgcgaagcgttcaaggctggcatctcgttc
ggtaaggacgacatggttatccctgacaccaagtgggaactggtcaacgacacacgcgat
caggttaaagacttcgaacagcagtacatggacggcctgatcactcagggcgaaaagtac
aacaaagttgtcgatgcttggtcaaagtcgaacgacaaagtcaccgaagcgatgatgaca
accatctcgaccactggtcgtgcggatgacggttctgagaacgaacctaactctgtttac
atgatggctcactctggtgcgcgtggttctgttacgcagatgaaacagctgggtggtatg
cgcggtctgatggccaagccgaacggcgagatcatcgaaacaccgatcatctcgaacttt
aaagaaggcctgacggttctcgaatacttcaactctacccacggtgctcgtaagggtctg
tcggatacggcgttgaagactgcgaactctggttacctgacacgtcgtttggtggacgtt
gcacaagattgcatcgtacgcgaagtggattgtggaacggaaatggcaatcactgctgaa
gccgcggtcaacgatggtgaggttatttcctcattgtccgagcgcgttcttggtcgtgtc
tctgctgatgacgttcttaagccaggtacggacgaggttctcgttaaagcgggtgagctg
atcgacgaacgcacagccgacatgatcgaagtagctggtgttgctaagatgcgcatccgc
agcccgctgacctgtgaagccgaagatggcgtttgcgcaatgtgttacggtcgtgacctg
tcgcgcggtacacgtgtaaacatcggcgaagctgttggtatcatcgcggcgcagtccatc
ggtgaacctggtacacagttgacaatgcgtacgttccacattggtggtgttgcgcagggt
ggccaacagtccttccttgaatcctccgtcgacggtgttgtcgagttgcgtaacgcgcaa
atcctcgagaacgagttcggtgagcaggttgtcatgggccgcaacatggtcctcgcgatc
atggacgaaaacggtgaagagcgtgcgaaccacaaggttggctacggttccaaagtgttt
gtcaaagacggtgcaaagattgcccgtggcgacaaaatgttcgaatgggatccgtacaca
ttgccgatcatcgctgaaaaggctggtacagttaagtttgttgacctcgtcaacggtatc
gcaatccgcgaagacaccgatgacgcgacaggcatgacccagaagatcgttaccgactgg
cgttccgcgcctaagggcaacgagctgaagccagaaatccttatcattggtgcagatggc
gagcctgttcgtaacgatgctggtaacccagtgacctacccaatgtccgttgatgcggtt
ctgtccatcgaagatggtcagcagatcgcagctggtgacgtcgttgcgcgtatcccgcgt
gaaggcgccaagaccaaggatattacaggtggtctgccacgtgttgctgagctctttgag
gcacgtcgccctaaagaccacgcaatcatcgcagaaaacgacggctatgttcgcttcgga
aaagactacaagaacaagcgtcgcatcgcgatcgagaacgcggatgatccggataccaag
gttgaatacatggttccaaagggcaagcacatcccagtgcaagaaggcgacttcgtgcaa
aagggcgattacatcatggacggcaacccagccccacatgacattctcgccatcatgggt
gttgaagcgcttgcggattacatgatcgacgaagttcaggacgtttaccgcctgcagggt
gttaagattaacgataagcacatcgaggttatcgttcgtcagatgctccagaagtgggaa
gtttccgacagcggtgaaacaacactgcttaagggtgaaaacgtcgacaaggctgagttt
gacgaagccaacgctaaggcagttgcccgcggtggtcgtccagcacagggtgagccgatc
ttgcttggtatcaccaaggcgtccttgcagacacgttccttcatctctgcggcgtccttc
caggaaacaacgcgcgttcttacggaagcctccgtacagggcaagcgggacaaactggtc
ggcctcaaagagaacgtcatcgttggtcgcttgatcccagcgggtacaggtggtgccaca
cagcgcgtcacacgtatcgcaactgagcgtgacaacgttgtcattcaggcgcgtcgtgaa
gaagctgaagccgcagctgcgctcgccgcacctgaagcaatggcagacgacgttgttggt
ggtgacgcattcgatacgatcatcgaaggcaacaccgaaagccgcgacgagtaa
DBGET
integrated database retrieval system
