Octadecabacter temperatus: OSB_17670
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Entry
OSB_17670 CDS
T04001
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
otm
Octadecabacter temperatus
Pathway
otm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSB_17670 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otm03019
]
OSB_17670 (rne)
03009 Ribosome biogenesis [BR:
otm03009
]
OSB_17670 (rne)
Enzymes [BR:
otm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OSB_17670 (rne)
Messenger RNA biogenesis [BR:
otm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OSB_17670 (rne)
Ribosome biogenesis [BR:
otm03009
]
Prokaryotic type
rRNA processing factors
OSB_17670 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AKS46312
UniProt:
A0A0K0Y647
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All DBs
Position
complement(1739232..1741943)
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AA seq
903 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFETQSRRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFNEIHPDYYQIPVADREALMAEEKAYAEAMKAEAEAEAEKPKRSRRRRKP
KAAEVDTKDAVATAEPAETPEEDTSGDIAGMETIDLGEDAAIVEGEATSHMETVAETPVE
EPADDGDDNSDDEAAAGSADATAKDESIESVADEDDQEDVRPVRKPRPKRYKIQEVIKVR
QILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAADRKKLKSIAN
EMLVPEGAGLIIRTAGSQRTKTEIKRDYEYLQRLWEQIRELTLKSTAPAQIYEEGNLIKR
SIRDLYSKEIDEVIVEGETGYRTAKDFMKMIMPSHAKNVTNYKDQMPLYARHQVEGYLNG
MFNPTVQLPSGGYIVIDTTEALVAVDVNSGRATKEGSIEQTATKTNLEAAAEVARQLRLR
DLAGLIVIDFIDMDERKNNAAVEKMMKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGML
ESTTQPCPHCHGTGLLRSDDNVALGILRQLEEEGVRGRSKEVLIKAPVMIANFLMNQKRE
HIAQIEARYGLSVRIECDPHLVSPDYTLEKFKTATRVVAEVELASVISSETAVMAEVEDV
DVTAEAQPEQQDGEAPTKKRRRRRRRRRGGGGGGENAEANNAENGGENAGEVAAAPVEGE
APAVEAPAVAAEAVAEEAPKPKRTRTRRKKSDAAPAEVAETVETAEAAPEEPAAEEAPAK
PKRTRTRRKKSDDAPAEEVKAEEVKAEEPAPAAEEEPAPKPKKKATRARKKPAAKKAETA
EAEAPAAETSAEAPEPVAEAKPKRVRKTTSKPKPVEAEAEVVEPAAEAKEAPKKRGWWSL
GGR
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgttgttgtggtt
gacggaaacaaagtcgaggaattcgactttgaaacccaatcccgtcgccagctggccggc
aacatctatctcgcaaaagtaacacgggtcgaaccatcgcttcaggcggcgtttgtggac
tatggcggcaaccgccacggtttcctcgcgttcaacgagatccaccctgactactaccaa
attccggttgctgaccgtgaagcgctgatggctgaagaaaaagcctacgccgaagcgatg
aaggccgaggctgaagccgaagctgaaaagcccaagcgttcacgtcgtcgccgtaagcca
aaagcggctgaggtcgacacaaaggacgcagtcgcaacggctgagcctgcagaaacacct
gaggaagatacctccggtgatatcgcgggcatggaaacgattgatctgggtgaagacgcc
gccatcgtagaaggcgaagccacgtcgcacatggaaactgttgcggaaacacctgttgaa
gagccagcagatgacggggacgacaacagtgatgacgaagctgcggctggaagcgcagat
gcgaccgctaaagatgaatccatcgaaagtgttgccgatgaggacgaccaagaagatgta
cgtcctgtgcgcaaaccgcgcccgaagcgttataaaattcaagaagttatcaaagttcgc
caaatccttctgatccaagtggtcaaagaagaacgcggcaacaagggcgctgccctgacg
acttacctttcccttgctggccgttactgcgtgctgatgccaaacaccgcgcgtggtggt
ggtatttcccgcaagatcacgaatgccgcagaccgcaagaagctgaaatccatcgccaat
gaaatgcttgtacctgagggtgctggcctgatcattcgaacagccggatcgcagcgcacc
aagaccgagatcaagcgcgactacgaatacctgcagcgcctgtgggaacagatccgcgag
cttacgctgaaatccacagcgcccgctcaaatctatgaagaaggcaatctgatcaaacgt
tcgatccgtgatctttatagcaaagagatcgacgaagtgatcgttgaaggcgagaccggt
taccgcaccgccaaagacttcatgaagatgatcatgccgtcccacgccaagaacgtgacc
aactataaagatcagatgccgctttatgcgcgccatcaggtcgaaggctatttgaacggc
atgttcaacccgaccgtgcagctgccgtccggtggctacatcgtgatcgacacgactgaa
gcgcttgtcgcggtggacgtgaactctggtcgtgcgaccaaggaaggctcgatcgagcaa
acggcgacaaagacgaaccttgaggccgctgcagaagtggcacgccaattgcgtctgcgt
gaccttgctgggctgatcgtcatcgacttcatcgacatggacgagcgtaagaacaacgct
gccgttgaaaagatgatgaaagataagctgaaaacggatcgggcacgcattcaggtgggc
cggatttctggttttggccttatggaaatgtcgcgtcagcgtctgcgtccgggcatgttg
gagtcaacgacacagccgtgcccacattgccacggcactgggcttctacgctctgatgat
aatgtcgccctcggcattcttcgccaactcgaagaagaaggcgtgcgcggtcgttccaaa
gaagttctgatcaaagcaccggtgatgatcgccaacttcctaatgaaccaaaagcgcgaa
catatcgcacagattgaggcccgctatggtctgtccgtgcgtattgaatgcgatccgcat
ctggtctcgcctgactacacgcttgagaagttcaagactgcgacccgcgtggttgccgaa
gtagagcttgcatcggttatttcgtccgaaacagccgttatggctgaggttgaggacgtg
gatgtgaccgctgaggcccaacctgagcaacaagacggcgaagcaccaaccaagaagcgc
cgtcgtcgtcgtcgtcgtcgtcgcggcggtgggggcggtggcgagaacgctgaagccaac
aacgctgagaacggtggcgaaaacgctggtgaagttgcagccgcgcctgttgaaggtgaa
gcgcctgcggttgaagcacctgctgtcgccgctgaggccgtggcagaagaggcaccaaag
ccgaaacgcactcgcacccgtcgcaagaaaagcgatgcggcaccagccgaggttgctgaa
acagttgagaccgctgaagctgcaccagaagaacctgcagctgaagaagccccagcgaag
ccaaagcgcacgcgcacccgtcgtaagaaaagcgacgatgcgccagcggaagaggtgaag
gccgaagaggtaaaggcagaagagccagcacctgcagcggaagaagagcctgcgccaaag
ccaaagaagaaggccacacgcgcacgtaagaagcctgcggcaaaaaaggctgagactgct
gaagcagaggctccagctgctgaaacgtcagcggaggcgcctgaacctgtcgcagaagca
aagccgaaacgcgttcgcaagaccacatcaaagccgaagcccgtagaggcggaagcagaa
gtcgtagaaccagctgccgaggccaaagaagcgcctaagaagcgtggctggtggtcgcta
ggtggtcgctaa
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