Octadecabacter temperatus: OSB_27840
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Entry
OSB_27840 CDS
T04001
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
otm
Octadecabacter temperatus
Pathway
otm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
otm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OSB_27840 (rhlE_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otm03019
]
OSB_27840 (rhlE_2)
Enzymes [BR:
otm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OSB_27840 (rhlE_2)
Messenger RNA biogenesis [BR:
otm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OSB_27840 (rhlE_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
HEM4
AAA_22
Helicase_RecD
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AKS47308
UniProt:
A0A0K0Y8K9
LinkDB
All DBs
Position
complement(2726394..2727713)
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AA seq
439 aa
AA seq
DB search
MDFDMLGLAPRLIAELKSQGITDPTPIQAQAIPHAMNGRDVMGLAQTGSGKTAAFGLPMI
DMLLKEQGKPEGKTARALILAPTRELAKQIQENLAAYTTGTHLKTMLVVGGAGITGQIRK
LERGVDLLVATPGRLIDLLERRAVRLGDTKFLVLDEADQMLDMGFIHALRQIAPLLATPR
QTMLFSATMPKLMGELAGAFLENPIRVQVNAPGKAVDRIEQSVHFVAKAAKTDLLLELID
KHRDERAIVFGRTKHGSEKLHKLLTNKGFASASIHGNKSQGQRDRAITDFKAGKVKILVA
TDVAARGLDIPEVKHVYNYDLPNVPENYVHRIGRTARAGAEGMAVAFCAPDEMGELRDIQ
KAMKADIPVAGGRPWAKDEEEAKPKRGGGGGGRRFGGGGGRGGKPGGGRPGGGGGGRPGG
GKPGGGGGNRRRKPNKASS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atggattttgatatgctgggcctcgcgccccgactgattgctgaactgaaaagccaaggc
atcactgacccgacgccaattcaggcgcaggcaatcccacatgcaatgaatggccgcgac
gtcatgggccttgcccaaacgggcagcggtaaaacggccgcctttggcctgccgatgatt
gatatgcttttgaaagagcaaggtaagcccgagggcaaaacagcgcgtgcgctgatcctt
gcgccgacccgtgaattggcaaaacaaattcaagagaacttggcggcctacacaacaggt
acgcaccttaagaccatgttggttgttggcggcgccggtattacgggccaaatccgtaag
cttgaacgcggcgttgaccttttggttgccacgccggggcgtttgatcgacctgcttgag
cgccgcgctgtgcgtttaggggatacaaagttcctcgtacttgatgaagctgaccagatg
ctcgacatgggcttcatccacgcgctgcgccaaatcgcgccgcttttggcgacgccgcgt
cagacgatgctgttctctgcgacgatgccgaaactgatgggcgaacttgcaggggcgttc
cttgagaacccgatccgcgttcaagtgaacgcaccgggtaaagccgttgatcgtattgaa
cagtcagtccacttcgttgccaaagccgcaaaaacagacctgttgttggagctgatcgac
aagcaccgtgatgagcgcgcgattgtctttggccgcaccaaacacgggtccgaaaagctg
cataagctgctgacgaacaagggcttcgcgtctgcatccatccacggcaacaaatcccaa
ggccagcgggaccgcgcgatcacggactttaaagctggtaaggtgaaaattctagtggcg
acagacgtggctgcccgtggattggatattccagaggtgaagcacgtctataactacgat
ctgccgaacgtgcctgaaaactatgtccaccgtattggtcgtacagcccgtgcaggtgct
gaaggtatggccgttgcgttctgtgcgcctgacgaaatgggcgaactgcgcgatatccaa
aaggccatgaaggctgacattcccgttgcgggtggtcgcccatgggccaaggacgaagaa
gaagccaaacccaagcggggcggaggcggcggtggtcgtcgtttcggaggtggcggtggc
cgtggcggtaagcctggtggcggtcgtcctggcggcggcggtggtggccgtccgggtggt
ggtaagcccggtggtggcggtggcaatcgccgtcgtaaaccgaacaaggcttcatcataa
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