Ottowia sp. oral taxon 894: ADJ79_00695
Help
Entry
ADJ79_00695 CDS
T04031
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
oto
Ottowia sp. oral taxon 894
Pathway
oto03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
oto00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ADJ79_00695
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
oto03019
]
ADJ79_00695
03009 Ribosome biogenesis [BR:
oto03009
]
ADJ79_00695
Enzymes [BR:
oto01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ADJ79_00695
Messenger RNA biogenesis [BR:
oto03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ADJ79_00695
Ribosome biogenesis [BR:
oto03009
]
Prokaryotic type
rRNA processing factors
ADJ79_00695
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AKU66128
LinkDB
All DBs
Position
complement(163789..166683)
Genome browser
AA seq
964 aa
AA seq
DB search
MKRMLINATQAEECRLAIVDGQKLLDYEVEVEGREQRKGNIYKAVVTRVEPSLEACFVDY
GEERHGFLPFKEISRQYFAEGVPVSQARISDVIKEGQELLVQVEKEERGNKGAALTTFIS
LAGRYVVLMPNNARGGGVSRRIEGDERAELKEAMDQLEYPKGMSIIARTAGIGRSATDLQ
WDLNYLLKLWGAIDDAAKGGKGAMLIYPESSLVIRSMRDYFSSDIGEILIDTDDMFEQAQ
QFMSHVMPEHASRVKRYRDAAPLFSRFQIEHQVESAYSRTVQLPSGGAIVIDHTEALVAV
DVNSARAIKGGDIEETATRTNLEAADEVARQMRLRDLGGLIVIDFIDMEESKNRREVENR
LREALRQDRARVQFGSISKFGLLEMSRQRLKPALSEGASIPCPRCGGSGHVRDTESSALQ
ILRVIQEESMKDNTAAVHVQVPVEVASFLLNEKRAEVAKIELRQRVAVVLVPNKTLETPH
YKLERLKHDDPRLDALASSYKLAETFEDPTVVTRRSQEPTNRQQPVIKGVLHDAPAPIAP
PAAQPAARPMPGGHPAYPGGQPASFMAWLKLWLQNLFGGHPAAPAPAADPAGKPREASRN
GQRRDNNRNSRNRNGQRRDNRDERTAERNAERNDRPADSDTRRPPRDNGPGSENRDSREG
RESRENRASREGGERSRPPRAERQDRPDRSDRPRRDPLPADAADTAGNAPVAAPIETSAE
PRRSENGRSEPRKPRAQAAAAESDTRQPPAAQADAASQSAALAEGESTPENTAENTAESA
PQGERRERRARDRYGRDRRRNSESADNTSESAHEGGSTASADAALEEAVPASYFSRGAAP
AAASAPTASAEAAPAAAPEPAPAAPADQAAPEKAPPARAKPEAAQPYDLPVAQLSGLIES
AGLQWVQSDPDRVAATQQAIAAEPPPQRTPRERAPLPVLDEGPLILVETRQDLRQAAMPF
DNAS
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctgatcaatgccacgcaggccgaagagtgccgcctggcgatcgtcgat
ggacaaaaactgcttgactacgaagtcgaagtcgaggggcgcgagcagcgcaagggcaac
atttacaaagccgtggtcacgcgcgtggagccatcgctggaggcgtgctttgtggactac
ggcgaggagcgccacggctttctgcctttcaaggaaatctcgcgccagtacttcgccgag
ggcgtgcccgtttcgcaggcgcgcatcagcgacgtcatcaaggaaggccaggagctgctg
gtgcaggtggaaaaagaagagcgcggcaacaagggcgcggcgctcaccaccttcatcagc
ctggccgggcgctacgtggtgctcatgcccaacaacgcgcgcggcggcggcgtttcgcgc
cgcatcgaaggcgacgagcgcgccgagctgaaagaggcgatggaccagctcgaatacccc
aagggcatgtccatcatcgcccgcaccgccggcataggccgcagcgcgaccgacctgcaa
tgggacctgaactacctgctcaagctctggggcgccattgacgacgcggccaaaggcggc
aagggcgccatgctgatctaccccgaaagcagcctggtcatccgctccatgcgcgactac
ttcagcagcgacattggcgaaatcctgatcgacaccgacgacatgttcgagcaggcccag
cagttcatgagccacgtgatgcccgagcacgccagccgcgtcaagcgctaccgcgacgct
gcgccgctgttttcgcgcttccagatcgagcaccaggtggaaagcgcctacagccgcacc
gtgcagctgccctcgggcggcgccatcgtcatcgaccacaccgaagccctcgtggcggtg
gacgtgaactccgcccgcgctatcaagggcggcgacatcgaagaaaccgccacccgcacc
aacctcgaagccgcagacgaagtggcccgccagatgcgcctgcgcgatttgggcggcctc
atcgtcatcgacttcatcgacatggaggaaagcaaaaaccgccgcgaagtggaaaaccgc
ctgcgcgaagccctgcgccaggaccgcgcccgcgtgcaatttggctccatcagcaaattc
ggcctgctggaaatgagccgccagcgcctcaagcccgccctctccgaaggcgcatccatt
ccctgcccgcgctgcggcggctccggccacgtgcgcgacaccgaatcgagcgcgctgcaa
atcctgcgcgtcatccaggaagagtccatgaaggacaacaccgccgccgtgcacgtgcaa
gtgccggtggaagtggccagcttcctgctcaacgaaaagcgcgccgaagtcgccaagatc
gagctgcgccagcgcgtggccgtcgtccttgtgcccaacaaaacgctggaaacgccccac
tacaagctcgagcgcctcaagcacgacgacccgcgccttgacgccctggcctccagctac
aaactggccgaaacgtttgaagaccccaccgtcgtcacccgccgcagccaggagccgacc
aaccgccagcagcccgtcatcaagggcgtgctgcacgacgcgcccgcgcccatcgcgccg
ccagcggcgcagcccgctgcgcgccccatgcccggcggccatccggcctaccccggcggc
cagcccgccagcttcatggcctggctcaagctctggctgcaaaacctctttggcggccac
ccggccgcccccgccccggcggctgaccccgctggcaagccccgcgaagcgagccgcaac
ggccagcgccgcgacaacaaccgcaacagccgcaaccgcaacggccagcgccgcgacaac
cgagacgagcgcaccgcagaacgcaacgccgaacgcaacgatcgccccgccgacagcgac
acgcgccgcccgccgcgcgacaacggcccaggcagcgaaaaccgtgacagccgcgaaggc
cgggaaagccgcgaaaaccgcgccagccgtgaaggcggcgaacgcagtcgcccgccgcgc
gccgaacggcaagaccggcccgaccgctccgaccgcccccgccgcgacccgctgcccgct
gatgcagccgatacggcaggcaacgcgcccgtagccgcgcccatcgaaaccagcgccgaa
ccccgccgcagcgaaaacggccgtagcgagcctcgcaagccacgcgcacaagccgcagcc
gccgaaagcgacacccgccagccgccagccgcccaggctgacgccgcaagccagagcgcc
gctcttgccgaaggcgaaagcacgccagaaaacacggcagaaaacacggcagaaagcgcc
ccccaaggcgagcgccgtgaacgccgcgcccgcgaccgctatggccgcgaccgccgccgc
aacagcgaaagcgccgacaacaccagcgaaagcgcccatgaaggcggcagcaccgccagc
gccgatgccgctttggaagaagccgtgcccgcctcctacttcagccgtggcgcagccccg
gcagccgccagcgcgccgactgccagcgccgaagccgcgccagccgccgcaccagagcct
gcccccgcagcgccagctgaccaggccgcgcctgaaaaagcgcccccggcccgcgccaaa
cccgaagcagcgcagccctacgacctgcccgtcgcccagctatccgggctgattgaaagc
gcgggcctgcaatgggtgcaatctgaccccgaccgcgtcgccgccacccagcaggccatc
gccgccgagccgccgccgcagcgcacgccgcgcgaacgcgcgcccttgcccgtgctggac
gaaggcccgctgatcctggtggaaacacggcaagacctgcgccaggccgccatgcctttt
gacaacgcctcataa
DBGET
integrated database retrieval system
